View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14341_low_3 (Length: 308)

Name: NF14341_low_3
Description: NF14341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14341_low_3
NF14341_low_3
[»] chr3 (3 HSPs)
chr3 (17-221)||(20605946-20606150)
chr3 (78-290)||(20593126-20593351)
chr3 (17-80)||(20590917-20590980)
[»] chr6 (2 HSPs)
chr6 (17-299)||(5155248-5155529)
chr6 (44-208)||(17537657-17537821)
[»] chr2 (3 HSPs)
chr2 (17-136)||(24509714-24509834)
chr2 (44-136)||(32152777-32152870)
chr2 (16-115)||(23739781-23739880)
[»] chr7 (2 HSPs)
chr7 (44-136)||(24176405-24176498)
chr7 (104-137)||(730150-730183)
[»] chr4 (4 HSPs)
chr4 (104-137)||(31229948-31229981)
chr4 (104-137)||(31234757-31234790)
chr4 (104-137)||(31234881-31234914)
chr4 (232-266)||(31234615-31234649)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 20605946 - 20606150
Alignment:
Q  17 acttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatataa 116  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  20605946 acttagcgcgcaagttatcttagtgcatttgtaatttcacttacatttacatttcatttgtattgcatgtagttagttacagatctcagcttctatataa 20606045  T
Q  117 gctactcttgtaaccgttttcatcaattaattaatacattctctctcttctttttctagagcttcaagctttatccatggtgatttccatggtggtgtca 216  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  20606046 gctactcttgtaaccgttttcatcaattaatcaatacattctttctcttctttttctagagcttcaagctttatccatggtgatttccatggcggtttca 20606145  T
Q  217 atctt 221  Q
    |||||    
T  20606146 atctt 20606150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 78 - 290
Target Start/End: Original strand, 20593126 - 20593351
Alignment:
Q  78 attgcatatagttagttagagatctcagcttctatataagctactcttgtaaccgttttcatcaattaattaatacattctctctcttctttttctagag 177  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  20593126 attgcatgtagttagttagagatcagagcttctatataagctactcttgtaactgttttcatcaattaatcaatacattctctctcttctttttctagag 20593225  T
Q  178 cttcaagctttatccatggtgatttccatggtggtgtcaatcttagatggttca-------------cttgctctgcttccgcacaatgaagatagaacg 264  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||  |             |||||||||||||||||||||||||||||||||    
T  20593226 cttcaagctttatccatggtgatttccatggtgatgtcaatcttagatggtataagagcaagtgaatcttgctctgcttccgcacaatgaagatagaacg 20593325  T
Q  265 ttcttttgttcgtcttcctcttctat 290  Q
    || |||||||||||||||||||||||    
T  20593326 ttgttttgttcgtcttcctcttctat 20593351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 20590917 - 20590980
Alignment:
Q  17 acttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtatt 80  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20590917 acttagcgcgcaagttatcttagtgcctttgtaatttcacttacatttacatttcatttgtatt 20590980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 5155529 - 5155248
Alignment:
Q  17 acttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatataa 116  Q
    |||||||| |||||||||||| |||| ||||||||||| ||| ||| ||||||||||||||||||||| |||||||||||||  || |||||||||||||    
T  5155529 acttagcgtgcaagttatcttggtgcatttgtaatttcactttcatatacatttcatttgtattgcatgtagttagttagaggacttagcttctatataa 5155430  T
Q  117 gctactcttgtaaccgttttcatcaattaattaatacattctctctcttctttttctagagcttcaagctttatccatggtgatttccatggtggtgtca 216  Q
    |||||||||||||||||||||||||||| || ||||||             ||||||||||||||||||||||||||||||| ||||||||| ||| |||    
T  5155429 gctactcttgtaaccgttttcatcaatt-atcaataca-------------ttttctagagcttcaagctttatccatggtggtttccatggcggtttca 5155344  T
Q  217 atcttagatggt-tca------------cttgctctgcttccgcacaatgaagatagaacgttcttttgttcgtcttcctcttctattcctcttct 299  Q
    |||||||||||| |||            |||||||||||||||||||||||||||| || ||| |||||||| |||||| ||||||||| ||||||    
T  5155343 atcttagatggtatcagagcaagcgcatcttgctctgcttccgcacaatgaagataaaatgttgttttgttcatcttccccttctattcttcttct 5155248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 17537821 - 17537657
Alignment:
Q  44 tttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatataagctactcttgtaaccgttttcatcaat 143  Q
    |||||||||||  || ||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||  ||||    
T  17537821 tttgtaatttcagtttcatttacatttcatttgtagtgcatctagttagttagagatcttagcttatatataagatactcttgtaaccgttttccacaat 17537722  T
Q  144 taattaataca-ttctctctcttctttttctagagcttcaagctttatccatggtgatttccatgg 208  Q
    |||| |||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  17537721 taatcaatacatttctctctcctc-ttttctagagcttcaagctttatccatggtgatttccatgg 17537657  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 24509714 - 24509834
Alignment:
Q  17 acttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata- 115  Q
    ||||||||||||||||   |||| || ||||||||||| ||| |||||||||||||||| | |||||| ||||||||||||  | ||||||||||||||     
T  24509714 acttagcgcgcaagtttcattagagcttttgtaatttcactttcatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatatat 24509813  T
Q  116 agctactcttgtaaccgtttt 136  Q
    ||||| || ||||||| ||||    
T  24509814 agctattcctgtaaccatttt 24509834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 32152870 - 32152777
Alignment:
Q  44 tttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata-agctactcttgtaaccgtttt 136  Q
    ||||||||||| ||| |||||||||||||||| | |||||| ||||||||||||  | |||||||||||||| ||||| |  ||||||||||||    
T  32152870 tttgtaatttcactttcatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatatatagctattactgtaaccgtttt 32152777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 23739781 - 23739880
Alignment:
Q  16 cacttagcgcgcaagttatcttagtgcctttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata 115  Q
    |||||||||||||||||   || | || ||||||||||| |||  ||||||||||||||| | |||||| ||||||||||||  | ||||||||||||||    
T  23739781 cacttagcgcgcaagtttcattcgagcttttgtaatttcactttgatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatata 23739880  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 24176498 - 24176405
Alignment:
Q  44 tttgtaatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata-agctactcttgtaaccgtttt 136  Q
    ||||||||||| ||| |||||||||||||||| | |||||| ||||||||||||  | |||||||||||||| ||||| || ||||||||||||    
T  24176498 tttgtaatttcactttcatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatatatagctattcctgtaaccgtttt 24176405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 730183 - 730150
Alignment:
Q  104 agcttctatataagctactcttgtaaccgttttc 137  Q
    |||||||||||||||||||| |||||||||||||    
T  730183 agcttctatataagctactcctgtaaccgttttc 730150  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 31229981 - 31229948
Alignment:
Q  104 agcttctatataagctactcttgtaaccgttttc 137  Q
    ||||||||||||||||||||||||||||||||||    
T  31229981 agcttctatataagctactcttgtaaccgttttc 31229948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 31234790 - 31234757
Alignment:
Q  104 agcttctatataagctactcttgtaaccgttttc 137  Q
    ||||||||||||||||||||||||||||||||||    
T  31234790 agcttctatataagctactcttgtaaccgttttc 31234757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 31234914 - 31234881
Alignment:
Q  104 agcttctatataagctactcttgtaaccgttttc 137  Q
    ||||||||||||||||||||||||||||||||||    
T  31234914 agcttctatataagctactcttgtaaccgttttc 31234881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 31234649 - 31234615
Alignment:
Q  232 cttgctctgcttccgcacaatgaagatagaacgtt 266  Q
    ||||||||||||||||||||||||||| |||||||    
T  31234649 cttgctctgcttccgcacaatgaagattgaacgtt 31234615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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