View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14342_high_2 (Length: 381)
Name: NF14342_high_2
Description: NF14342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14342_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 27434037 - 27433732
Alignment:
| Q |
2 |
gcacagaggatgcactaataatacctgaactctaacacggaaaaattaaactacacaacttcaataagtttattcaacttcatggacaaaaataatttat |
101 |
Q |
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| T |
27434037 |
gcacagaggatgcactaataataccagaactctaacacggaaaaattaaactacacaacttcaataagtttattcaacttcatggacaaaaataatttat |
27433938 |
T |
|
| Q |
102 |
agaagatcaatggagaccaaattttgtccctcgcaaaccaatcatccaatccttgactaatatacacatattaatccctg-acaattttcatatcttaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27433937 |
agaagatcaatggagaccaaattttgtccctcgcaaaccaatcatccaatccttgactaatatacacatattaatccctgaacaattttcatatcttaga |
27433838 |
T |
|
| Q |
201 |
taaattaatcgttaactcattataatagagagactaatttgtgtcaaatataaaaatgtcaggaactgatttgcttattttttgtcatggactagataga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27433837 |
taaattaatcgttaactcattataatagagagactaatttgtgtcaaatataaaaatgtcaggaactgatttgcttattttttgtcatggactagataga |
27433738 |
T |
|
| Q |
301 |
cctgtg |
306 |
Q |
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|||||| |
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| T |
27433737 |
cctgtg |
27433732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 32 - 235
Target Start/End: Original strand, 27442620 - 27442823
Alignment:
| Q |
32 |
tctaacacggaaaaattaaactacacaacttcaataagtttattcaacttcatggacaaaaataatttatagaagatcaatggagaccaaattttgtccc |
131 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |
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| T |
27442620 |
tctaacacagaaaaattaaattacacaacttcaataagtttattcaacttcatggacaaaaataatttataaaagaacaatggataccaaattttgtccc |
27442719 |
T |
|
| Q |
132 |
tcgcaaaccaatcatccaatccttgactaatatacacatattaatccctgacaattttcatatcttagataaattaatcgttaactcattataatagaga |
231 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||| ||||||||||| | ||||||||| ||||||||| |
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| T |
27442720 |
tcgcaaaccaatcatccaatccttgacaaatatacacatattaatcccccacatttgtcatatctttgataaattaattggtaactcattgtaatagaga |
27442819 |
T |
|
| Q |
232 |
gact |
235 |
Q |
| |
|
|||| |
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| T |
27442820 |
gact |
27442823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 27434126 - 27434039
Alignment:
| Q |
32 |
tctaacacggaaaaattaaactacacaacttcaataagtttattcaacttcatggacaaaaataatttatagaagatcaatggagacc |
119 |
Q |
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|||||||||||||||||||| |||||||||||||||| || ||||||||||| || ||| ||||| ||||| ||||||| |||||||| |
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| T |
27434126 |
tctaacacggaaaaattaaattacacaacttcaataaattcattcaacttcacgggcaacaataaattataaaagatcattggagacc |
27434039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 38142838 - 38142788
Alignment:
| Q |
217 |
tcattataatagagagactaatttgtgtcaaatataaaaatgtcaggaact |
267 |
Q |
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|||||||||||||||||||||||||| | ||| ||||||||||| ||||| |
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|
| T |
38142838 |
tcattataatagagagactaatttgtccctaatttaaaaatgtcatgaact |
38142788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 15962649 - 15962592
Alignment:
| Q |
199 |
gataaattaatcgttaactcattataatagagagactaatttgtgtcaaatataaaaa |
256 |
Q |
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||||||||| || |||||||||| || ||||||||||||||||| || || ||||||| |
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|
| T |
15962649 |
gataaattagtccttaactcattgtattagagagactaatttgtttctaaaataaaaa |
15962592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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