View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14342_high_3 (Length: 240)
Name: NF14342_high_3
Description: NF14342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14342_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16695114 - 16695336
Alignment:
| Q |
1 |
tatgtcctctattttcacaaaggtcttgtatctataacgacaagcacaaaacaagaaccaaccaaaattcaacactcccaatccagccacaatgaaatag |
100 |
Q |
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| T |
16695114 |
tatgtcctctattttcacaaaggtcttgtatctataacgacaagcacaaaacaagaaccaaccaaaattcaacactcccaatccagccacaatgaaatag |
16695213 |
T |
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| Q |
101 |
aaatactccaatcttcccttattgacatcactatccaaccaatcaggttgaccttgttttccactaaaactatgaataatgttcacaatgaaagtgctta |
200 |
Q |
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| T |
16695214 |
aaatactccaattttcccttattgacatcactatccaaccaatcaggttcaccttgttttccactaaaactatgaataatgttcacaatgaaagtgctta |
16695313 |
T |
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| Q |
201 |
aattacttgcaactgctgtttga |
223 |
Q |
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| T |
16695314 |
aattacttgcaactgctgtttga |
16695336 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 25260749 - 25260655
Alignment:
| Q |
65 |
aaattcaacactcccaatccagccacaatgaaatagaaatactccaatcttcccttattgacatcactatccaaccaatcaggttgaccttgttt |
159 |
Q |
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| T |
25260749 |
aaatttaacactgccaatccagcaatgatgaaataaaagtattccaatcttcccttattaatatcactatcaagccaatctgcttcaccttgttt |
25260655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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