View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14342_low_1 (Length: 596)
Name: NF14342_low_1
Description: NF14342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14342_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 44709815 - 44709246
Alignment:
| Q |
1 |
accctggctgagtatggtgggatgtgtgctaccaccaatggcatacataagccaatgagtgtagtcattgttaacaatatgaaagaatccccatctacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44709815 |
accctggctgagtatggtgggatgtgtgctaccaccaatggcatacataagccaatgagtgtagtcattgttaacaatatgaaagaatccccatctacac |
44709716 |
T |
|
| Q |
101 |
cttggcatcctctgtatcaatcctttcccaaaatggttgaaagccacagttatttgcgagatttgatctcctgagaacccatcatttgctccaaataaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44709715 |
cttggcatcctctgtatcaatcctttcccaaaatggttaaaagccacagttatttgcgagatttgatctcctgagaacccatcatttgctccaaataaca |
44709616 |
T |
|
| Q |
201 |
taacctacaccacaagaaaaatcatttacnnnnnnnnnnnnnnnngcatgcatgtaagcaaaagaataagtagatgagatgttgttaattacatcattat |
300 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44709615 |
taacctacaccacaagaaaaatcattta----------tatatatgcatgcatgtaagcaaaagaataagtagatgagatgttgttaattacatcattat |
44709526 |
T |
|
| Q |
301 |
gacgcgtcatatggcagttggaaatggtaatagccgttgatcccgctacggcatcaaccaatccatcagcacaattccacattgaaatatgatctatcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44709525 |
gacgcgtcatatggcagttggaaatggtaatagccgttgatcccgctacggcatcaaccaatccatcagcacaattccacattgaaatatgatctatcca |
44709426 |
T |
|
| Q |
401 |
aacatgactagctccaaacattgaaattgcatcaccatcactcgcactacgggatccatagtgatccatcgagtctctgatttggccaccgctggnnnnn |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44709425 |
aacatgactagctccaaacattgaaattgcatcaccatcactcgcactacgggatccatagtgatccatcgagtctctgatttggccaccgctggttttt |
44709326 |
T |
|
| Q |
501 |
nnagtatcatggatatgtaacccatggatgattatgtttttcacgtattgcaacgttatctgagcaccctcactaatatg |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44709325 |
ttagtatcatggatatgtaacccatggatgattatgtttttcacgtattgcaacgttatctgagcaccctcactaatatg |
44709246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 2045814 - 2045705
Alignment:
| Q |
32 |
ccaccaatggcatacataagccaatgagtgtagtcattgttaacaatatgaaagaatccccatctacaccttggcatcctctgtatcaatcctttcccaa |
131 |
Q |
| |
|
||||||||||||||||| | |||||| ||||| |||||||| | || ||| || ||||||||||| || |||||||| || || |||||||||| || | |
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| T |
2045814 |
ccaccaatggcatacatgatccaatgtgtgtaatcattgttcaaaacatggaaaaatccccatctgcatcttggcattctttgaatcaatccttgtccga |
2045715 |
T |
|
| Q |
132 |
aatggttgaa |
141 |
Q |
| |
|
|||||||||| |
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|
| T |
2045714 |
aatggttgaa |
2045705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 3224635 - 3224760
Alignment:
| Q |
32 |
ccaccaatggcatacataagccaatgagtgtagtcattgttaacaatatgaaagaatccccatctacaccttggcatcctctgtatcaatcctttcccaa |
131 |
Q |
| |
|
|||||||| |||||||| | ||||||||| ||||||||||| | || ||||| || || |||| ||||||||||| || || |||||||||| |||| |
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| T |
3224635 |
ccaccaattgcatacattatccaatgagtatagtcattgttcaaaacatgaacaaaaccatatctgcaccttggcattctttgaatcaatccttgtccaa |
3224734 |
T |
|
| Q |
132 |
aatggttgaaagccacagttatttgc |
157 |
Q |
| |
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| |||||||| || || ||||||||| |
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| T |
3224735 |
agtggttgaatgctactgttatttgc |
3224760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 25006552 - 25006600
Alignment:
| Q |
28 |
gctaccaccaatggcatacataagccaatgagtgtagtcattgttaaca |
76 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25006552 |
gctaccaccaatggcatacatttcccaatgagtgtagtcattgttaaca |
25006600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 443
Target Start/End: Original strand, 25007113 - 25007205
Alignment:
| Q |
351 |
gcatcaaccaatccatcagcacaattccacattgaaatatgatctatccaaacatgactagctccaaacattgaaattgcatcaccatcactc |
443 |
Q |
| |
|
||||||| ||| ||||||| |||||| | ||| |||| |||||| |||||||||| |||||| ||||| || ||||| |||||||||||||| |
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| T |
25007113 |
gcatcaatcaaaccatcagtacaatttctcatggaaacatgatcaatccaaacattactagcaccaaagatggaaataccatcaccatcactc |
25007205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 16911862 - 16911735
Alignment:
| Q |
14 |
atggtgggatgtgtgctaccaccaatggcatacataagccaatgagtgtagtcattgttaacaatatgaaagaatccccatctacaccttggcatcctct |
113 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||| ||| ||||||||||||||||||| | ||| | || || ||||||||||||||||||| | |
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| T |
16911862 |
atggtaggatgcatgctgccaccaatggcatacatctcccagtgagtgtagtcattgttaagcacatggataaaaccaaatctacaccttggcatccttt |
16911763 |
T |
|
| Q |
114 |
gtatcaatcctttcccaaaatggttgaa |
141 |
Q |
| |
|
| || |||| || ||||| |||||||| |
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| T |
16911762 |
ggattaatctcttaccaaagtggttgaa |
16911735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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