View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14342_low_2 (Length: 428)
Name: NF14342_low_2
Description: NF14342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14342_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 22040789 - 22041188
Alignment:
| Q |
13 |
aaaatcagatgacacttaaacatgttcatggattatgcacaaagagagccgcaaagatcattaggagaagtaaaaccctaatctttaacgcatctcttga |
112 |
Q |
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| T |
22040789 |
aaaatcagatgacacttaaacatgttcatggattatgcacaaagagagccgcaaagatcattaggagaagtaaaaccctaatctttaacgcatctcttga |
22040888 |
T |
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| Q |
113 |
tggtaatttataaagcagcaatctctacataaagatgagcacttttgatggaaccaaattcttccaaagtttatgactcaccgagattccgccattggca |
212 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22040889 |
tggtaatttataaagcagcaatctctacgtaaagatgagcacttttgatggaaccaaattcttccaaagtttacgactcaccgagattccgccattggca |
22040988 |
T |
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| Q |
213 |
aaacatataagagatgtcaagaaaagtcgacaacattttgtccgtggatgaatggctaaagagcagttgtggtaacaaatttacctcaaaaacctctcat |
312 |
Q |
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| T |
22040989 |
aaacatataagagatgtcaagaaaagtcgacaacattttgttcgtggatgaatggctaaagagcagttgtggtaacaaatttaactcaaaaacctctcat |
22041088 |
T |
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| Q |
313 |
cgatcaccctgctaccacctctgcaaagtccatcattcaagcatggtcccatctatgaaacacccttcaatcaacctcttcattcaatcaacaccatctt |
412 |
Q |
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| T |
22041089 |
cgatcaccctgctaccacctctgcaaagtccatcattcaagcatggtcccatctatgaaacacccttcaatcaacctcttcattcaatcaacaccatctt |
22041188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 224 - 412
Target Start/End: Complemental strand, 2426424 - 2426237
Alignment:
| Q |
224 |
agatgtcaagaaaagtcgacaacattttgtccgtggatgaatggctaaagagcagttgtggtaacaaatttacctcaaaaacctctcatcgatcaccctg |
323 |
Q |
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|||||||||||||| | ||||||||||||| ||||| |||||| ||||||| ||||||||||||||||| |||||| ||||||||| || | || |
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| T |
2426424 |
agatgtcaagaaaattagacaacattttgtttgtggaggaatggttaaagagaagttgtggtaacaaattcacctcagaaacctctcgtcaa----ccca |
2426329 |
T |
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| Q |
324 |
ctaccacctctgcaaagtccatcattcaagcatggtcccatctatgaaacacccttcaatcaacct---cttcattcaatcaacaccatctt |
412 |
Q |
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|||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2426328 |
ctacaacctctgcgaaatccatcattcaagcatggtcccatctccgaaacacccttcaatcaacctcttcttcattcaatcaacaccatctt |
2426237 |
T |
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