View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14342_low_3 (Length: 425)
Name: NF14342_low_3
Description: NF14342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14342_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Complemental strand, 16119002 - 16118604
Alignment:
| Q |
8 |
atcatatgtgtcaacaagaattttctagcttgatggagtgaattggtaacataatgttgtatgaatgtaataaattcacccattcaatatttacagacat |
107 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16119002 |
atcatatgtgtcaacagcaattttctagcctgatggagtgaattggtaacataaagttgtatgaatgtaataaattcaccctttcaatatttacagacat |
16118903 |
T |
|
| Q |
108 |
tacctttgtagtttgtagaaatcttcctaattttattcagttattttgtatcttgtttttgttggtattaatcaataatgattgtgtttttattcatggt |
207 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16118902 |
tacctttgtag-------aaatcttcctaattttattcagttattttgtatcttgtttttgttggtattaatcaataatgattgtgtttttattcatggt |
16118810 |
T |
|
| Q |
208 |
attctt---atgcattatgatgttggaagctgtgacatttggccatttatttatttttaatcaaaatagatgcaa-gccgcggttgaatttagtttttga |
303 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16118809 |
attcttcttatgcattatgatgttggaagctgtgacatttggccatttatttatttttaatcaaaatagatgcaaagccgcggttgaatttagtttttga |
16118710 |
T |
|
| Q |
304 |
ttaatgttaaggtaccagtttacaacatgtttctattcttgtgttgaatcttcttgaacatgttatatgaggtttgtaaatacctcatctcttcttttgg |
403 |
Q |
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| T |
16118709 |
ttaatgttaaggtaccagtttacaacatgtttctattcttgtgttgaatcttcttgaacatgttatatgaggtttgtaaatacctcatctcttcttttgg |
16118610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Original strand, 16340659 - 16341057
Alignment:
| Q |
8 |
atcatatgtgtcaacaagaattttctagcttgatggagtgaattggtaacataatgttgtatgaatgtaataaattcacccattcaatatttacagacat |
107 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
16340659 |
atcatatgcgtcaacagcaattttctagcttgatggagtgaattggtaacataaagttgtatgcatgtaataaattcaccctttcaatatttacagacat |
16340758 |
T |
|
| Q |
108 |
tacctttgtagtttgtagaaatcttcctaattttattcagttattttgtatcttgtttttgttggtattaatcaataatgattgtgtttttattcatggt |
207 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16340759 |
tacctttgtag-------aaatcttcctaattttattcagttattttgtatcttgtttttgttggtattaatcaataatgattgtgtttttattcatggt |
16340851 |
T |
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| Q |
208 |
attctt---atgcattatgatgttggaagctgtgacatttggccatttatttatttttaatcaaaatagatgcaa-gccgcggttgaatttagtttttga |
303 |
Q |
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| T |
16340852 |
attcttcttatgcattatgatgttggaagctgtgacatttggccatttatttatttttaatcaaaatagatgcaaagccgcggttgaatttagtttttga |
16340951 |
T |
|
| Q |
304 |
ttaatgttaaggtaccagtttacaacatgtttctattcttgtgttgaatcttcttgaacatgttatatgaggtttgtaaatacctcatctcttcttttgg |
403 |
Q |
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| T |
16340952 |
ttaatgttaaggtaccagtttacaacatgtttctattcttgtgttgaatcttcttgaacatgttatatgaggtttgtaaatacctcatctcttcttttgg |
16341051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 36000291 - 36000210
Alignment:
| Q |
120 |
ttgtagaaatcttcctaattttattcagttattttgtatcttgtttttgttggtattaatcaataatgattgtgtttttatt |
201 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||| |||||||||| |
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| T |
36000291 |
ttgtagaaatcttcctaattttattcagttcttttgtgtcttgcttttgttggtattaatcaacgatgattatgtttttatt |
36000210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 265
Target Start/End: Complemental strand, 35998352 - 35998199
Alignment:
| Q |
119 |
tttgtagaaatcttcctaattttattcagttattttgtatct----tgtttttgttggtattaatcaataatga---ttgtgtttttattcatggtattc |
211 |
Q |
| |
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|||||||||||||||||||||||| || ||| || | ||| | || ||||||||||||||||||||||||| | | |||||||||||||||||| |
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| T |
35998352 |
tttgtagaaatcttcctaattttactcggttcttatatatgtgttctgcttttgttggtattaatcaataatgacggtattttttttattcatggtattc |
35998253 |
T |
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| Q |
212 |
ttatgcattatgatgttggaagctgtgacatttggccatttatttatttttaat |
265 |
Q |
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||| || ||| ||||||| ||| ||||||||| | ||||||| |||||||| |
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| T |
35998252 |
ttaggctttacgatgttgcaagtcgtgacatttttctatttattgctttttaat |
35998199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 36021456 - 36021343
Alignment:
| Q |
123 |
tagaaatcttcctaattttattcagttattttgtat----cttgtttttgttggtattaatca-----ataatgattgtgtttttattcatggtattctt |
213 |
Q |
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|||||||||||||||||||| || || |||||| | ||| ||||| ||||||||||||| ||||||| ||| |||||||||||||||||||| |
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| T |
36021456 |
tagaaatcttcctaattttactctcttcttttgtgttctgctttttttttttggtattaatcaatattataatgactgtatttttattcatggtattctt |
36021357 |
T |
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| Q |
214 |
atgcattatgatgt |
227 |
Q |
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| || ||||||||| |
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| T |
36021356 |
aggctttatgatgt |
36021343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 12898867 - 12898919
Alignment:
| Q |
120 |
ttgtagaaatcttcctaattttattcagttattttgtatcttgtttttgttgg |
172 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||| |||| |||| |
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| T |
12898867 |
ttgtagaaatcttcctaattttattcagttcttttgtgtcttgattttattgg |
12898919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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