View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14342_low_6 (Length: 215)

Name: NF14342_low_6
Description: NF14342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14342_low_6
NF14342_low_6
[»] chr5 (2 HSPs)
chr5 (35-200)||(31572246-31572418)
chr5 (91-200)||(11492547-11492655)
[»] chr7 (2 HSPs)
chr7 (113-199)||(24730288-24730374)
chr7 (37-87)||(24729939-24729989)
[»] chr3 (1 HSPs)
chr3 (148-200)||(27057828-27057880)
[»] chr1 (1 HSPs)
chr1 (148-200)||(39833594-39833646)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 31572246 - 31572418
Alignment:
Q  35 ggagcacagatgcatacagaacacacaacttcatgcattccaattattgaaaataaagaattcatggttac-------aatacataagaaactacacaat 127  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||||||||||||||    
T  31572246 ggagcacagatgcatactgaacacacaacttcatgcattccaattattgaaaataaataattcatggttacaacttacaatacataagaaactacacaat 31572345  T
Q  128 atgaagaatcatcgcacacaagcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctctg 200  Q
    |||||| |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  31572346 atgaagcatcatcgcacacaagcttattcttgttcagaaatttactccacccagttatgagcaaatgtctctg 31572418  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 11492547 - 11492655
Alignment:
Q  91 agaattcatggttacaatacataagaaactacacaatatgaagaatcatcgcacacaagcttattcttgttcggaaatgcactccacccagttatgagca 190  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||  |||||||||||| |||||||| | ||||||||||||||||||||||||||    
T  11492547 agaattca-ggttacaatacataagaaactacacaatatgaagcatcactgcacacaagctttttcttgtttgaaaatgcactccacccagttatgagca 11492645  T
Q  191 aatgtctctg 200  Q
    ||||||||||    
T  11492646 aatgtctctg 11492655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 24730374 - 24730288
Alignment:
Q  113 aagaaactacacaatatgaagaatcatcgcacacaagcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctct 199  Q
    ||||||||||||||||| ||| ||||  || ||||||| | |||||||||| |||||||||||||||||||||||||||||||||||    
T  24730374 aagaaactacacaatattaagcatcactgctcacaagcattttcttgttcgcaaatgcactccacccagttatgagcaaatgtctct 24730288  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 24729989 - 24729939
Alignment:
Q  37 agcacagatgcatacagaacacacaacttcatgcattccaattattgaaaa 87  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  24729989 agcacagatgcatacagaacacacagcttcatgcattcaaattactgaaaa 24729939  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 27057828 - 27057880
Alignment:
Q  148 agcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctctg 200  Q
    ||||| || ||||||| |||||||||||||||| |||||||||||||||||||    
T  27057828 agcttttttttgttcgcaaatgcactccacccaattatgagcaaatgtctctg 27057880  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 39833646 - 39833594
Alignment:
Q  148 agcttattcttgttcggaaatgcactccacccagttatgagcaaatgtctctg 200  Q
    ||||| || ||||||| |||||||||||||||| |||||||||||||||||||    
T  39833646 agctttttattgttcgcaaatgcactccacccaattatgagcaaatgtctctg 39833594  T

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