View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_high_13 (Length: 375)
Name: NF14343_high_13
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_high_13 |
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| [»] chr8 (5 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 2 - 375
Target Start/End: Complemental strand, 16301045 - 16300673
Alignment:
| Q |
2 |
attttatccatgtccttatgcacactttgttgaatttatgcatgacttttaatggatatggctgctgagnnnnnnnatgctcgaggacaggctaaatgat |
101 |
Q |
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| T |
16301045 |
attttttccatgtctttatgcacactttgttgaatttatgcatgacttttaatggctatggctgctgagtttttt-atgctcaaggacaggctaaatgat |
16300947 |
T |
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| Q |
102 |
tactatacacacttaaaacttttttacacacccttaaacattattacagtcctaaagttgaggtaaatgattaataaatacactttaaatctaataaaca |
201 |
Q |
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| T |
16300946 |
tactataaacacttaaaacttttttacacacccttaaacattattacagtcctaaagttggggtaaatgattaataaatacactttaaatctaataaaca |
16300847 |
T |
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| Q |
202 |
cactttatatctattaatacacacccttaaatatttaatactcacctaataaatttttaaataatgaagctggtgcagcagcatcaactcgaactattaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |
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| T |
16300846 |
cactttatatctattaatacacacccttaaatatttaatactcacctaataaatttataaataatgaagctggtgcagcagcatcaactcaaactatgaa |
16300747 |
T |
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| Q |
302 |
taatgaagctggtgcagcgccatcaactcaggttgctggacctgaactaactaatactcaaccattaaagaaga |
375 |
Q |
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| T |
16300746 |
taatgaagctggtgcagcgccatcaactcaggttgctggacctgaactaactaatactcaaccattaaagaaga |
16300673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 16307515 - 16307447
Alignment:
| Q |
2 |
attttatccatgtccttatgcacactttgttgaatttatgcatgacttttaatggatatggctgctgag |
70 |
Q |
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| T |
16307515 |
attttttccatgtctttatgcacactttgttgaatttatgcatgacttttaatggctatggctgctgag |
16307447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 16307606 - 16307538
Alignment:
| Q |
2 |
attttatccatgtccttatgcacactttgttgaatttatgcatgacttttaatggatatggctgctgag |
70 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
16307606 |
attttttccatgtctttatgcacactttgttgaatttatgcatgacttttaatggctatagctgctgag |
16307538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 16307697 - 16307629
Alignment:
| Q |
2 |
attttatccatgtccttatgcacactttgttgaatttatgcatgacttttaatggatatggctgctgag |
70 |
Q |
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| T |
16307697 |
attttatctatgtctttatgcacactttgttgaatttctgcatgacttttaatggctatggctgctgag |
16307629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 16307771 - 16307720
Alignment:
| Q |
19 |
atgcacactttgttgaatttatgcatgacttttaatggatatggctgctgag |
70 |
Q |
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| T |
16307771 |
atgcacactttgttaaatttatgcatgatttttaatgcctatggctgctgag |
16307720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 2 - 375
Target Start/End: Complemental strand, 22898542 - 22898170
Alignment:
| Q |
2 |
attttatccatgtccttatgcacactttgttgaatttatgcatgacttttaatggatatggctgctgagnnnnnnnatgctcgaggacaggctaaatgat |
101 |
Q |
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| T |
22898542 |
attttttccatgtctttatgcacactttgttgaatttatgcatgacttttaatggctatggctgctgagtttttt-atgcttgaggacaggctaaatgat |
22898444 |
T |
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| Q |
102 |
tactatacacacttaaaacttttttacacacccttaaacattattacagtcctaaagttgaggtaaatgattaataaatacactttaaatctaataaaca |
201 |
Q |
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| T |
22898443 |
tactatacacacttaaaacttttttacacacccttaaacattattacagtcataaagttggggtaaatgattaataaacacactttaaatctaataaaca |
22898344 |
T |
|
| Q |
202 |
cactttatatctattaatacacacccttaaatatttaatactcacctaataaatttttaaataatgaagctggtgcagcagcatcaactcgaactattaa |
301 |
Q |
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| T |
22898343 |
cactttatatctattaatacacacccttaaatatttaatactcatctaataaatttttaaataatgaagctggtgcggcagcatcaactcaaactatgat |
22898244 |
T |
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| Q |
302 |
taatgaagctggtgcagcgccatcaactcaggttgctggacctgaactaactaatactcaaccattaaagaaga |
375 |
Q |
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| T |
22898243 |
taatgaagctggtgcagcaccatcaactcaggttgctggacctgaactaactaatactcaaccattaaagaaga |
22898170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 22898633 - 22898565
Alignment:
| Q |
2 |
attttatccatgtccttatgcacactttgttgaatttatgcatgacttttaatggatatggctgctgag |
70 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22898633 |
attttatccatgtctttatgcacactttgttgaatttatgcatgacttttaatggctatggctgctgag |
22898565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 22898707 - 22898656
Alignment:
| Q |
19 |
atgcacactttgttgaatttatgcatgacttttaatggatatggctgctgag |
70 |
Q |
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|||||||||||||| ||||||||||||| |||||||| ||||||||||||| |
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| T |
22898707 |
atgcacactttgttaaatttatgcatgatttttaatgcctatggctgctgag |
22898656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 19975065 - 19975014
Alignment:
| Q |
19 |
atgcacactttgttgaatttatgcatgacttttaatggatatggctgctgag |
70 |
Q |
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|||||||||||||| ||||||||||||| |||||||| ||||||||||||| |
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| T |
19975065 |
atgcacactttgttaaatttatgcatgatttttaatgcctatggctgctgag |
19975014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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