View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14343_high_16 (Length: 356)

Name: NF14343_high_16
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14343_high_16
NF14343_high_16
[»] chr2 (11 HSPs)
chr2 (26-343)||(10515437-10515747)
chr2 (273-343)||(10505074-10505144)
chr2 (263-340)||(7483539-7483616)
chr2 (263-340)||(10486563-10486640)
chr2 (263-340)||(10491042-10491119)
chr2 (263-340)||(10470461-10470536)
chr2 (267-321)||(10858244-10858298)
chr2 (297-340)||(10542569-10542612)
chr2 (263-316)||(28106780-28106833)
chr2 (263-314)||(10846757-10846808)
chr2 (263-316)||(27965327-27965380)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 343
Target Start/End: Complemental strand, 10515747 - 10515437
Alignment:
Q  26 taatggtcgtctctgtgtttctaaagatgttatcttctatgaacataggtttctatatcatgatttgttccctccaaa-tataacacaactctttttgcc 124  Q
    |||||||| ||||| |||||||||||   |||||||| ||||||||||||| |  |||| ||||||||| ||||| || | ||||||||||| || ||||    
T  10515747 taatggtcatctctatgtttctaaag---ttatcttcaatgaacataggttcccttatcttgatttgttgcctcccaagtctaacacaactcattctgcc 10515651  T
Q  125 ccctctcctgatatctctc--cttccatacttatcattgcctccaaatatatcagtagagaccctcagttcctcctgacttctttgtatcctggccaaat 222  Q
     || |||||||||||||||  ||||||||| ||||||||  | |     | ||| |     ||||| |||||||| | ||| | |||||| |  ||||||    
T  10515650 tccactcctgatatctctcaccttccatacctatcattggtttccctcttgtcact-----ccctccgttcctcccggcttttctgtatcgtccccaaat 10515556  T
Q  223 tcacacaaccaccatgtctctactgcatcatttcccagtgtctcagagacaaacttagggttcttagtaaaaaagactgcacaattctacactcaaacta 322  Q
    |||||||||  | |||||||||||||||||||||||| ||||   ||||||||| | || ||||||||||||||||||||||||||||||||||||||||    
T  10515555 tcacacaactgctatgtctctactgcatcatttcccaatgtcg--gagacaaacatgggattcttagtaaaaaagactgcacaattctacactcaaacta 10515458  T
Q  323 atttactctctaatcctatgc 343  Q
    ||| ||||||||||| |||||    
T  10515457 attcactctctaatcatatgc 10515437  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 10505144 - 10505074
Alignment:
Q  273 aaacttagggttcttagtaaaaaagactgcacaattctacactcaaactaatttactctctaatcctatgc 343  Q
    ||||||||||||| |||| ||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  10505144 aaacttagggttcgtagttaaaaaaactgcacaactctacactcaaactaattcactctctaatcctatgc 10505074  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 7483539 - 7483616
Alignment:
Q  263 tctcagagacaaacttagggttcttagtaaaaaagactgcacaattctacactcaaactaatttactctctaatccta 340  Q
    |||||||||| |||||| | ||||||||||||| ||||||||||||||||||||| ||||||| | ||||||||||||    
T  7483539 tctcagagacgaacttacgcttcttagtaaaaacgactgcacaattctacactcagactaattcattctctaatccta 7483616  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 10486640 - 10486563
Alignment:
Q  263 tctcagagacaaacttagggttcttagtaaaaaagactgcacaattctacactcaaactaatttactctctaatccta 340  Q
    |||||| | |||||||| | |||||||||||||  |||||||||||||||| ||||||||||| ||||||||||||||    
T  10486640 tctcagggtcaaacttacgcttcttagtaaaaacaactgcacaattctacaatcaaactaattcactctctaatccta 10486563  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 10491119 - 10491042
Alignment:
Q  263 tctcagagacaaacttagggttcttagtaaaaaagactgcacaattctacactcaaactaatttactctctaatccta 340  Q
    |||||||||| ||||||   |||||||||||||  | |||||||||||||||||||||||||| ||||||||||||||    
T  10491119 tctcagagacgaacttacacttcttagtaaaaacaattgcacaattctacactcaaactaattcactctctaatccta 10491042  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 10470536 - 10470461
Alignment:
Q  263 tctcagagacaaacttagggttcttagtaaaaaagactgcacaattctacactcaaactaatttactctctaatccta 340  Q
    ||||| |||||||| || |||||||||||||||||||||||||||||||||   || |||||| ||||||||||||||    
T  10470536 tctcaaagacaaacataaggttcttagtaaaaaagactgcacaattctaca--taagctaattcactctctaatccta 10470461  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 10858298 - 10858244
Alignment:
Q  267 agagacaaacttagggttcttagtaaaaaagactgcacaattctacactcaaact 321  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  10858298 agagacagacttagggttcttagtaaaaaagactgcacagttctacacttaaact 10858244  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 10542612 - 10542569
Alignment:
Q  297 gactgcacaattctacactcaaactaatttactctctaatccta 340  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  10542612 gactgcacagttctacactcaaactaattcactctctaatccta 10542569  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 28106780 - 28106833
Alignment:
Q  263 tctcagagacaaacttagggttcttagtaaaaaagactgcacaattctacactc 316  Q
    |||| |||||||||||||||||||  ||| ||||||||||||| ||||||||||    
T  28106780 tctccgagacaaacttagggttctatgtataaaagactgcacacttctacactc 28106833  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 10846808 - 10846757
Alignment:
Q  263 tctcagagacaaacttagggttcttagtaaaaaagactgcacaattctacac 314  Q
    |||||||||||||||| ||| |||||||||||||||| ||||| || |||||    
T  10846808 tctcagagacaaacttggggctcttagtaaaaaagaccgcacagttatacac 10846757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 27965380 - 27965327
Alignment:
Q  263 tctcagagacaaacttagggttcttagtaaaaaagactgcacaattctacactc 316  Q
    |||| |||||||||||||||||||  ||| |||||| |||||| ||||||||||    
T  27965380 tctccgagacaaacttagggttctatgtataaaagaatgcacacttctacactc 27965327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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