View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14343_high_20 (Length: 329)
Name: NF14343_high_20
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 158092 - 158403
Alignment:
| Q |
1 |
gatattcaaaagaaggtgggatttacttttactatggaagatgtaagtactacgacaaaattggtagagttggaagaaggtgatgtaggattgaaggtag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
158092 |
gatattcaaaagaaggtgggatttacttttactatggaagatgtaagtactacgacaaaattggtagagttggaagaaggtgatgtaggattgaaggtag |
158191 |
T |
|
| Q |
101 |
caagggagagactaaattgcaatcaatgattattacaaccttcaatgttagaaggttgggaggaagaaataaaaggaataaaatcaaggagttggtgagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
158192 |
caagggagagactaaattgcaatcaatgattattacaaccttcaatgttagaaggttgggaggaagaaataaaaggaataaaatcaaggagttggtgagt |
158291 |
T |
|
| Q |
201 |
aataataaagtggannnnnnnggctttccnnnnnnnnnnnnttgagttaataacagggtccttatgtcactctttgtagggtggagttgattgtgattgg |
300 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
158292 |
aataataaagtggatttttttggctttccaaaaaataaaaattgagttaataacagggtccttatgtcactctttgtagggtggagttgattgtgattgg |
158391 |
T |
|
| Q |
301 |
gtgtttctacct |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
158392 |
gtgtttctacct |
158403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University