View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_high_21 (Length: 325)
Name: NF14343_high_21
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 4228406 - 4228709
Alignment:
| Q |
8 |
gacatcatcagcaacaataatggcatgnnnnnnngcactcacaacaccacttggtgttgcaattgggacattagttgcctcaaatttcaacccttatagt |
107 |
Q |
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| T |
4228406 |
gacatcatcagcaacaataatggcatgtttttttgcacttacaacaccacttggtgttgcaattgggacattagttgcctcaaatttcaacccttatagt |
4228505 |
T |
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| Q |
108 |
ccaggggctcttatcacagaaggtatcttggactctttgtcagctggaattttagtgtacatggctttggtggatttaatagctgctgattttcttagta |
207 |
Q |
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| T |
4228506 |
ccaggggctcttatcacagaaggtatcttggactctttgtcagctggaattttagtgtacatggctttggtggatttaatagctgctgattttcttagta |
4228605 |
T |
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| Q |
208 |
agaaaatgcgttgtagcttaaggcttcagattgtgtccttttgtttgcttttccttggggctggatctatgtcctctcttgccctttgggcttaaataat |
307 |
Q |
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| T |
4228606 |
agaaaatgcgttgtagcttaaggcttcagattgtgtccttttgtttgcttttccttggggctggatctatgtcctctcttgccctttgggcttaaataat |
4228705 |
T |
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| Q |
308 |
ttat |
311 |
Q |
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|||| |
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| T |
4228706 |
ttat |
4228709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 271
Target Start/End: Complemental strand, 48078882 - 48078707
Alignment:
| Q |
96 |
aacccttatagtccaggggctcttatcacagaaggtatcttggactctttgtcagctggaattttagtgtacatggctttggtggatttaatagctgctg |
195 |
Q |
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| T |
48078882 |
aacccttatagtcctggtgcactcatagcggaaggtatattggatgcactgtcagcaggaattttagtgtacatggctttagtagacttgatagcagctg |
48078783 |
T |
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| Q |
196 |
attttcttagtaagaaaatgcgttgtagcttaaggcttcagattgtgtccttttgtttgcttttccttggggctgg |
271 |
Q |
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| T |
48078782 |
attttcttagcaaaagaatgagttgtaactttaggctgcagttagtatcatattgtatgcttttccttggagctgg |
48078707 |
T |
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