View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14343_high_34 (Length: 239)
Name: NF14343_high_34
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_high_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 10766195 - 10766410
Alignment:
| Q |
7 |
gagaagcaaaggaggtggacttataagggttctcaaatctttttgaaagagagtcaaaagtgcttaactgcttccggtgaagggcttccagtttccgttt |
106 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10766195 |
gagaatcaaaagaggtggacttataagggttctcaaatctttttgaaagagagtcaaaagtgcttaactgcttccggtgaagggcttccagtttccgttt |
10766294 |
T |
|
| Q |
107 |
ctgatgattgcgaaagcaagaatagttcatggaaaactgcatcaccttctaaacttcatttggctactgttaatcaagatggcaaacaacaactttgctt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10766295 |
ctgatgattgcgaaagcaagaatagttcatggaaaactgcatcaccttctaaacttcatttggctactgttaatcaagatggcaaacaacaactttgctt |
10766394 |
T |
|
| Q |
207 |
gcaaaaggatactaat |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10766395 |
gcaaaaggatactaat |
10766410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 38326357 - 38326529
Alignment:
| Q |
22 |
tggacttataagggttctcaaatctttttgaaagagagtcaaaagtgcttaactgcttccggtgaagggcttccagtttccgtttctgatgattgcgaaa |
121 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||| || | ||||||||||||||| ||||||||||||||||| | |||||||||||| ||||| |
|
|
| T |
38326357 |
tggatttataatggttctcaaatccttttgaatgattccaagaagtgcttaactgctattggtgaagggcttccagtagctatttctgatgattacgaaa |
38326456 |
T |
|
| Q |
122 |
gcaagaatagttcatggaaaactgcatcaccttctaaacttcatttggctactgttaatcaagatggcaaaca |
194 |
Q |
| |
|
|||||| |||||||||||| ||| ||||| ||||| |||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
38326457 |
acaagaacagttcatggaaatctgaatcactttctagacttcatttggctactgtggatcaaaatgggaaaca |
38326529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University