View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_1 (Length: 630)
Name: NF14343_low_1
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 16 - 620
Target Start/End: Original strand, 27775520 - 27776124
Alignment:
| Q |
16 |
aatttccttcgaagtttgcatctccttgtgtgcaatcaataaatgctgcccgtgatctatgtataattgccatcttgcatatatgtgtgtgtatggatgc |
115 |
Q |
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| T |
27775520 |
aatttccttcgaagtttgcatctccttgtgtgcaatcaataaatgctgcccgtgatctatgtataattgccatcttgcatatatgtgtgtgtatggatgc |
27775619 |
T |
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| Q |
116 |
atgtatgttaaaataactgatattgatttgtttgttttatgatttgacagatgatgtgaatattattactaggacttgggacttttcttatttccttatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27775620 |
atgtatgttaaaataactgatattgatttgtttgttttatgatttgacagatgatgtgaatattattactgggacttgggacttttcttatttccttatt |
27775719 |
T |
|
| Q |
216 |
tcgatgtgtttataatttcattatttcctttatgcacatattccttttcctgattgtcctctttccttgtactatattttctcttactctataagtcaac |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
27775720 |
tcgatgtgtttataatttcattatttcctttatgcacatattccttttcctgattgtcctctttccttgtaatatattttctcttactcaataagtcaac |
27775819 |
T |
|
| Q |
316 |
taggaaagtttctaagctataattagctgatttaatccatatggccgagggattcaatttgcactctgttgaatatgcgatttctgtgtctaaatcagac |
415 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27775820 |
taggaaagtttctaagctacaattagctgatttaatccatatggccgagggattcaatttgcactctgttgaatatgcgatttctgtgtctaaatcagac |
27775919 |
T |
|
| Q |
416 |
tacacaacaacgagggctgtgtctagacgaaggggctagactcacaccacgtgatgaaccaaggttcggatcccaactgtgagaggtggtcacatttatt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27775920 |
tacacaacaacgagggctgtgtctagacgaaggggctagactcacaccacgtgatgaaccaaggttcggatcccaactgtgaaaggtggtcacatttatt |
27776019 |
T |
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| Q |
516 |
gtccaacaatgcctcaaataggattactgcatgtgaagggagccgatgggaaaccnnnnnnnttcagactacactcacctctatttataataggatgcag |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
27776020 |
gtccaacaatgcctcaaataggattactgcatgtgaagggagccgatgggaaaccaaaaaaattcagactacactcacctctatttataatagcatgcag |
27776119 |
T |
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| Q |
616 |
aataa |
620 |
Q |
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||||| |
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| T |
27776120 |
aataa |
27776124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 617
Target Start/End: Complemental strand, 43784381 - 43784343
Alignment:
| Q |
579 |
tcagactacactcacctctatttataataggatgcagaa |
617 |
Q |
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| T |
43784381 |
tcagactacactcacctctattgataatagcatgcagaa |
43784343 |
T |
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