View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14343_low_10 (Length: 469)

Name: NF14343_low_10
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14343_low_10
NF14343_low_10
[»] chr7 (2 HSPs)
chr7 (170-268)||(13778324-13778422)
chr7 (1-45)||(13778583-13778627)
[»] chr3 (5 HSPs)
chr3 (315-429)||(6799346-6799460)
chr3 (315-404)||(6797489-6797576)
chr3 (315-426)||(6531337-6531448)
chr3 (353-434)||(6941084-6941165)
chr3 (353-434)||(6944304-6944385)
[»] chr1 (3 HSPs)
chr1 (170-269)||(7428229-7428328)
chr1 (170-269)||(545838-545937)
chr1 (1-45)||(7428060-7428104)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 13778422 - 13778324
Alignment:
Q  170 gactaccatttaaaattgtgttgtcttagttaaattacacaacagttttatttgactcctttaaaagtggcgttgcattatagcctaaatgttgtagtg 268  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13778422 gactaccatttaaaattgtgttgttttagttaaattacacaacagttttatttgactcctttaaaagtggcgttgcattatagcctaaatgttgcagtg 13778324  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13778627 - 13778583
Alignment:
Q  1 gagagagtgggagagaaacgtgaagaagcgattatgagagagagt 45  Q
    |||||||||||||||||||||||||||||| |||| |||||||||    
T  13778627 gagagagtgggagagaaacgtgaagaagcgcttattagagagagt 13778583  T

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Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 315 - 429
Target Start/End: Complemental strand, 6799460 - 6799346
Alignment:
Q  315 tggtttctgatttctaaagttacatcagatatggacagacatatagaacacaatccatagatatttcaatgatcaaaataggggaagagaaacacgtaca 414  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  6799460 tggtttctaatttctaaagttacatcagatttggacagacatatagaacacaatccatagatattttaatgatcaaaatatgggaagagaaacacataca 6799361  T
Q  415 aaaataagggaatat 429  Q
    ||||||| |||||||    
T  6799360 aaaataacggaatat 6799346  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 6797576 - 6797489
Alignment:
Q  315 tggtttctgatttctaaagttacatcagatatggacagacatatagaacacaatccatagatatttcaatgatcaaaataggggaagaga 404  Q
    |||||||  |||||||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||||| | |||||||||    
T  6797576 tggtttccaatttctaaagttacatcagatatgtaca--catatagaacacaatccatagatattccaatgatcaaaagatgggaagaga 6797489  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 426
Target Start/End: Complemental strand, 6531448 - 6531337
Alignment:
Q  315 tggtttctgatttctaaagttacatcagatatggacagacatatagaacacaatccatagatatttcaatgatcaaaataggggaagagaaacacgtaca 414  Q
    |||||||| ||||||||||| |  | ||||||||||| ||| ||||||||||||||||| |||||  |||||| ||||   ||||||| |||||| ||||    
T  6531448 tggtttctaatttctaaagtaattttagatatggacacacacatagaacacaatccatatatattgtaatgattaaaaggtgggaagaaaaacacataca 6531349  T
Q  415 aaaataagggaa 426  Q
    ||||||||||||    
T  6531348 aaaataagggaa 6531337  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 434
Target Start/End: Original strand, 6941084 - 6941165
Alignment:
Q  353 acatatagaacacaatccatagatatttcaatgatcaaaataggggaagagaaacacgtacaaaaataagggaatatattga 434  Q
    |||||||||||||| ||||||||||||  |||||| ||||   ||||||| |||||| |||||||||||||||| |||||||    
T  6941084 acatatagaacacagtccatagatattctaatgattaaaaggtgggaagaaaaacacatacaaaaataagggaagatattga 6941165  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 434
Target Start/End: Original strand, 6944304 - 6944385
Alignment:
Q  353 acatatagaacacaatccatagatatttcaatgatcaaaataggggaagagaaacacgtacaaaaataagggaatatattga 434  Q
    |||||||||||||| |||| |||||||  |||||| ||||   ||||||| |||||| |||||||||||||||| |||||||    
T  6944304 acatatagaacacagtccagagatattctaatgattaaaaggtgggaagaaaaacacatacaaaaataagggaagatattga 6944385  T

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Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 7428229 - 7428328
Alignment:
Q  170 gactaccatttaaaattgtgttgtcttagttaaattacacaacagttttatttgactcctttaaaagtggcgttgcattatagcctaaatgttgtagtga 269  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  7428229 gactaccatttaaaattgtgttgtcttagttaaattacacaaaagttttatttggctcctttaaaagtggcgttccattatagcctaaatgttgtagtga 7428328  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 545838 - 545937
Alignment:
Q  170 gactaccatttaaaattgtgttgtcttagttaaattacacaacagttttatttgactcctttaaaagtggcgttgcattatagcctaaatgttgtagtga 269  Q
    |||||||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  545838 gactaccatttaaaattgtgttgtttttgtcaaattagacaacagttttatttgactcctttaaaagtgacgttgcattatagcctaaatgttgtagtga 545937  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7428060 - 7428104
Alignment:
Q  1 gagagagtgggagagaaacgtgaagaagcgattatgagagagagt 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7428060 gagagagtgggagagaaacgtgaagaagcgattatgagagagagt 7428104  T

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