View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14343_low_11 (Length: 411)
Name: NF14343_low_11
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 30991938 - 30992195
Alignment:
| Q |
1 |
taagttaaatgaagatattattcagataatcatcatagctatcttctctaacaaattcaatgatacctttctgaactccttcatacaaatatgaagtttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30991938 |
taagttaaatgaagatattattcagataatcatcatagctatcttctctaacaaattcaatgatacctttctgaactcc---atacaaatatgaagtttt |
30992034 |
T |
|
| Q |
101 |
ttggaagacttgcaactca--gatactcactaggtagaaatattattaaagtgaaagatctagtacaaacacttatcaggcatcattttcaacatggaca |
198 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30992035 |
ttggaagacttgcaactcattgatactcactaggtagaa-tattattaaagtgaaagatctagtacaaacacttattaggcatcattttcaacatggaca |
30992133 |
T |
|
| Q |
199 |
ccaacattcgagtcatccaaatccaacggtccatcttcatgtgctacccgtctgctagacga |
260 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30992134 |
ccaacattcgagtcatccaagtccaacggtccatcttcatgtgctacccgtctgctagacga |
30992195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 316 - 394
Target Start/End: Original strand, 30992251 - 30992329
Alignment:
| Q |
316 |
acaaaggaaaggaatgatctaagacgagcagaacgcgatgagaattgaacgttgttgttattgttcttcgagtaatgct |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30992251 |
acaaaggaaaggaatgatctaagacgagcagaacgcgatgagaattgaacgttgttgttattgttcttcgagtaatgct |
30992329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University