View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14343_low_12 (Length: 401)
Name: NF14343_low_12
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 33355388 - 33355016
Alignment:
| Q |
1 |
cctgttgttttcgtcgtcttcttattattattcccactgccggatccccatggagtaagttctttttatcatttaactattttagttgtatttaagcttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||| | | |||||||||||||||||||||||||||||||||| |
|
|
| T |
33355388 |
cctgttgttttcgtcgtcttcttattattattccctctgtcagatccctatggagtaagttatctatatcatttaactattttagttgtatttaagcttg |
33355289 |
T |
|
| Q |
101 |
gactgagaatcacttaattatttcaacaattatcttctctctaaaaccctaaaacttactcttaaatattcataacaatcgttgttagaatccattttta |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33355288 |
gactgagaatcactcaattatttcaacaattatcttctctctaaaaccctaaaacttactcttaaatattcataacaatcgtttctagaatccattttta |
33355189 |
T |
|
| Q |
201 |
cccttgtttgattatgactgagcttaatttttgtttagtacagggacctcccaccttatgattctggatctccgagatcctctccttccctgccacccgt |
300 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33355188 |
cccttgtttgagtatgattgagcttaatttttgtttggtacagggacctcccaccttatgattctggatctccgagatcctctccttcccttccacccgt |
33355089 |
T |
|
| Q |
301 |
tgtcgtgccgtggcaccactactatccctttccaatgggcatggatgacttcaacgggtatgattgtttttac |
373 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33355088 |
tgtcgtgctgaggcaccactactatcactttccaatgggcatggatgacttcaatgggtatgattgtttttac |
33355016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 45 - 375
Target Start/End: Original strand, 33547048 - 33547378
Alignment:
| Q |
45 |
tccccatggagtaagttctttttatcatttaactattttagttgtatttaagcttggactgagaatcacttaattatttcaacaattatcttctctctaa |
144 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33547048 |
tccctatggagtaagttctttatatcatttaactattttagttgtatttaagcttggactgagaatcactcaattatttcaacaattatcttctctctaa |
33547147 |
T |
|
| Q |
145 |
aaccctaaaacttactcttaaatattcataacaatcgttgttagaatccatttttacccttgtttgattatgactgagcttaatttttgtttagtacagg |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
33547148 |
aaccctaaaacttactcttaaatattcataacaatcgttgctagaatccatttttacccttgtttgattatgattgagcttaatttttgtttggtacaga |
33547247 |
T |
|
| Q |
245 |
gacctcccaccttatgattctggatctccgagatcctctccttccctgccacccgttgtcgtgccgtggcaccactactatccctttccaatgggcatgg |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33547248 |
gacctcccaccttatgattctggatctccgagatcctctccttccctgccacctgttgtcgtgccgaggcaccactactatccctttccaatgggcatgg |
33547347 |
T |
|
| Q |
345 |
atgacttcaacgggtatgattgtttttacca |
375 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
33547348 |
atgacttcaacgggtatggttgtttttacca |
33547378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 33548006 - 33548377
Alignment:
| Q |
1 |
cctgttgttttcgtcgtcttcttattattattcccactgccggatccccatggagtaagttctttttatcatttaactattttagttgtatttaagcttg |
100 |
Q |
| |
|
|||||||||||||| ||| | |||||||| ||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33548006 |
cctgttgttttcgttgtcgttttattatttttccctccgccggatccctatggagtaagttctttctatcatttaactattttagttgtatttaagcttg |
33548105 |
T |
|
| Q |
101 |
gactgagaatcacttaattatttcaacaattatcttctctctaaaaccctaaaacttactcttaaatattcataacaatcgttgttagaatccattttta |
200 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
33548106 |
gactgagaatcactcaattagttcaacaattatcttctctctaaaaccctaaaacttactcttaaatattcacaacaatcgttgctagaatccattttta |
33548205 |
T |
|
| Q |
201 |
cccttgtttgattatgactgagcttaatttttgtttagtacagggacctcccaccttatgattctggatctccgagatcctctccttccctgccacccgt |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33548206 |
cccttgtttgattatgattgagcttaatttttgtttggtacagagacctcccaccttatgattctggatctccgaga---tctccttccctgccacccgt |
33548302 |
T |
|
| Q |
301 |
tgtcgtgccgtggcaccactactatccctttccaatgggcatggatgacttcaacgggtatgattgtttttacca |
375 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33548303 |
tgtcgtgccgaggcaccgctactatcactttccaatgggcatggatgacttcaacgtgtatgattgtttttacca |
33548377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 28105143 - 28105082
Alignment:
| Q |
120 |
atttcaacaattatcttctctctaaaaccctaaaa--cttactcttaaatattcataacaat |
179 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
28105143 |
atttcaataattatcttctctctaaaaccctaaaactcttactctcaaatgttcataacaat |
28105082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 27967608 - 27967661
Alignment:
| Q |
128 |
aattatcttctctctaaaaccctaaaa--cttactcttaaatattcataacaat |
179 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| |||| ||||||||||| |
|
|
| T |
27967608 |
aattatcttctctctaaaacccaaaaactcttactctcaaatgttcataacaat |
27967661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 31297638 - 31297577
Alignment:
| Q |
120 |
atttcaacaattatcttctctctaaaaccctaaaa--cttactcttaaatattcataacaat |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||||| |
|
|
| T |
31297638 |
atttcaacaattatcttctctctaaaaccctaaaactcttgctctcaaatattcatgacaat |
31297577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 26371126 - 26371092
Alignment:
| Q |
122 |
ttcaacaattatcttctctctaaaaccctaaaact |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
26371126 |
ttcaacaattatcttctctctaaaaccctaaaact |
26371092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 147
Target Start/End: Complemental strand, 55287173 - 55287145
Alignment:
| Q |
119 |
tatttcaacaattatcttctctctaaaac |
147 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
55287173 |
tatttcaacaattatcttctctctaaaac |
55287145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University