View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_13 (Length: 397)
Name: NF14343_low_13
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_13 |
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| [»] scaffold0854 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 4229120 - 4229429
Alignment:
| Q |
1 |
actcccgtaatcgaaattcaaaattttaattagtcaatgtttatttttaataggaggaatgataactagacacaaaattttagacataataccaacacca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
4229120 |
actcccgtaatcgaaattcaaaattttaattagtcaatgtctatttttaataggaggaatgataactagatacaaaattttagacacaataccaacacca |
4229219 |
T |
|
| Q |
101 |
tgggcttttttgtcatttcaaccttaagttaagggcaactttgtaaaaccactacacaccctcttctatttctctacctcgtgccccattctctcctctg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4229220 |
tgggcttttttgtcatttcaaccttaagttaagggcagctttgtaaaaccaatacacaccctcttctatttctctaccccgtgccccattctctcctctg |
4229319 |
T |
|
| Q |
201 |
tttggtttctctcagaactgaaccacaagtccacaaccatcgtcctcgcaccacctccgtcctcccaccaccaccgtcaccatcctccgtcgcggtgacc |
300 |
Q |
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||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
4229320 |
tttagtttctctcagaactgaaccacaagtccacaaccaccgtcctcgcaccacctccgtcctcccaccaccatcgtcaccatcctccgtcgcgatgacc |
4229419 |
T |
|
| Q |
301 |
cacatccatt |
310 |
Q |
| |
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||| |||||| |
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|
| T |
4229420 |
cacgtccatt |
4229429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 4229469 - 4229524
Alignment:
| Q |
338 |
tctcactgtcctccagatctcccgccgtcgtcctccccaccaccaccatcctccca |
393 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4229469 |
tctcactgtcctccagatctctcgccgtcgtcctccccaccaccaccatcctccca |
4229524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 38301207 - 38301270
Alignment:
| Q |
54 |
gaggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcattt |
118 |
Q |
| |
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|||||| ||||||||| |||||| |||| |||| |||||||||||||||| | ||||||||||| |
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| T |
38301207 |
gaggaacgataactagccacaaa-ttttggacacaataccaacaccatggacagttttgtcattt |
38301270 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 54 - 393
Target Start/End: Original strand, 1016 - 1361
Alignment:
| Q |
54 |
gaggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgtaaaaccact |
153 |
Q |
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|||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1016 |
gaggaatgataattagacacaaaattttagacacaatatcaacaccatgggcttttttgtcatttcaaccttaagttaagggcagctttgtaaaaccact |
1115 |
T |
|
| Q |
154 |
acacaccctcttctatttctctacctcgtgccccattctctcctctgtttggtttctctcagaactgaaccacaagtccacaaccatcgtcctcgcacca |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1116 |
acacaccctcttctatttctctacctcgtgccccattctctcctctgtttagtttctctcagaactgaaccacaagtccacaaccaccgtcctcgcacca |
1215 |
T |
|
| Q |
254 |
cctccgtcctcccaccac------caccgtcaccatcctccgtcgcggtgacccacatccattnnnnnnnnnnnnnnnnnnnnnnngaagtctcactgtc |
347 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| ||| |||||||||| |
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|
| T |
1216 |
cctccgtcctcccaccaccaccatcaccatcaccatcctccgtcgcggtgacccacgtccatttctctttctctctccatctctctgaactctcactgtc |
1315 |
T |
|
| Q |
348 |
ctccagatctcccgccgtcgtcctccccaccaccaccatcctccca |
393 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
1316 |
ctccagatctcccaccgtcgtcctccccaccaccaccattctccca |
1361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 53 - 310
Target Start/End: Complemental strand, 4154778 - 4154517
Alignment:
| Q |
53 |
ggaggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgtaaaaccac |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
4154778 |
ggaggaatgataactagacacaaaattttagacacaataccaacaccataggcaattttgttatttcaaccttaagttaagggcagctttgtaaaaccac |
4154679 |
T |
|
| Q |
153 |
tacacaccctcttctatttctctacctcgtgcc----ccattctctcctctgtttggtttctctcagaactgaaccacaagtccacaaccatcgtcctcg |
248 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||| ||||| ||||||| |
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| T |
4154678 |
tacgcaccctcttctgtttctctacctcgtgccatattcattctctcttctgtttagtttctctcataactgaaccacaagtccataaccactgtcctcg |
4154579 |
T |
|
| Q |
249 |
caccacctccgtcctcccaccaccaccgtcaccatcctccgtcgcggtgacccacatccatt |
310 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||| |
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|
| T |
4154578 |
caacacctccgtcctcccaccaccaccgtcaccatcctccgacgcagtgacccccgtccatt |
4154517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 41642871 - 41642940
Alignment:
| Q |
55 |
aggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaacct |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||| ||||| | |||||| |||||||||| |
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| T |
41642871 |
aggaatgataactagacacaaaattttagacacaatatcaacatcatggacaattttgttatttcaacct |
41642940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 45 - 310
Target Start/End: Complemental strand, 53305368 - 53305101
Alignment:
| Q |
45 |
ttttaataggaggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgt |
144 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| ||| |||||||||| | | |||||||||||||||||||||||||||||| |||||| |
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|
| T |
53305368 |
ttttaaaacgaggaatgataactagacacaaaattttaaacacaataccaacatccag-----ttttgtcatttcaaccttaagttaagggcagctttgt |
53305274 |
T |
|
| Q |
145 |
aaaaccactacacaccctcttctatttctctacctcgtgccccat-------tctctcctctgtttggtttctctcagaactgaaccacaagtccacaac |
237 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
53305273 |
aaaaccaccacacaccctcttttgtttctctacctcgtgccacatcattcattctctcttctgtttagtttctctcagaactgaaccacaagtccataac |
53305174 |
T |
|
| Q |
238 |
catcgtcctcgcaccacctccgtcctcccaccaccaccgtcaccatcctccgtcgcggtgacccacatccatt |
310 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||| |
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|
| T |
53305173 |
cactgtcctcgcaacacctccgtcctcccaccaccaccgtcaccatcctccgacgcagtgacccccgtccatt |
53305101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 338 - 393
Target Start/End: Complemental strand, 53305074 - 53305019
Alignment:
| Q |
338 |
tctcactgtcctccagatctcccgccgtcgtcctccccaccaccaccatcctccca |
393 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||||||||||||| ||||||| |
|
|
| T |
53305074 |
tctcactgtcctccagatctcccaccgttggcctccccaccaccaccaacctccca |
53305019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 26335653 - 26335554
Alignment:
| Q |
49 |
aataggaggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgtaaaa |
148 |
Q |
| |
|
|||| |||||||||||| | ||||||||| || ||| || | ||||||||||| | |||||||||||||||| ||| ||||||||| ||||||||| |
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|
| T |
26335653 |
aataagaggaatgataagtgaacacaaaatatttaacacaaaaacaacaccatggacagttttgtcatttcaaccataaaataagggcaattttgtaaaa |
26335554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 14699733 - 14699623
Alignment:
| Q |
54 |
gaggaatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgtaaaaccact |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| || | |||||| || ||||||||||| |
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|
| T |
14699733 |
gaggaatgataactagacacaaaattttagacacaataccaacaccatgggcaattttgttatttcaacctcaaatcgagggcagtttggtaaaaccact |
14699634 |
T |
|
| Q |
154 |
acacaccctct |
164 |
Q |
| |
|
|||||| |||| |
|
|
| T |
14699633 |
acacacactct |
14699623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 8551572 - 8551680
Alignment:
| Q |
58 |
aatgataactagacacaaaattttagacataataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcaactttgtaaaaccactacac |
157 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| || | ||||||| || ||||||||||||||| |
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| T |
8551572 |
aatgataattagacacaaaattttagacacaataccaacaccatgggcaattttgttatttcaacctcaaatcaagggcagtttggtaaaaccactacac |
8551671 |
T |
|
| Q |
158 |
accctcttc |
166 |
Q |
| |
|
|| |||||| |
|
|
| T |
8551672 |
actctcttc |
8551680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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