View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_15 (Length: 368)
Name: NF14343_low_15
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 32318082 - 32317734
Alignment:
| Q |
1 |
aattagttatcacattcaatgccttgctactcaccttaaaacatttgtttgcctataattgtctagtaagcaaacatccaatcaattgtgttctccttga |
100 |
Q |
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| T |
32318082 |
aattagttatcacattcaatgccttgctactcaccttaaaacatttgtttgcctataattgtctagtaagcaaacatccaatcaattgtgttctccttga |
32317983 |
T |
|
| Q |
101 |
gcgccaaatacacttttctctctcacatactttcaacaaataggtacgtaactattcattcaaatctactccacccaatccatgtgcatttcagatctta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32317982 |
gcgccaaatacacttttctctctcacatactttcaacaaataggtacgtaactattcattcaaatctactccacccaatccatgtgcatttcagatctta |
32317883 |
T |
|
| Q |
201 |
ccgttccgtcactatcatcatttaatttccaccattcacttttttcaatactattattattattacgatcattgtcattattatttttctttgatctgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32317882 |
ccgttccgtcactatcatcatttaatttccaccattcacttttttcaatactattattattattacgatcattgtcattattatttttctttgatctgat |
32317783 |
T |
|
| Q |
301 |
tcgttggttttagttttagggtttatgcgccatggcagatgcaccgaac |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32317782 |
tcgttggttttagttttagggtttatgcgccatggcagatgcaccgaac |
32317734 |
T |
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