View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14343_low_16 (Length: 365)

Name: NF14343_low_16
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14343_low_16
NF14343_low_16
[»] chr7 (3 HSPs)
chr7 (222-351)||(29259049-29259178)
chr7 (47-124)||(29258870-29258947)
chr7 (259-348)||(10256616-10256704)
[»] chr4 (5 HSPs)
chr4 (259-348)||(50530993-50531081)
chr4 (3-36)||(23418376-23418409)
chr4 (1-38)||(55450461-55450498)
chr4 (2-38)||(17519091-17519127)
chr4 (2-38)||(34074800-34074836)
[»] chr3 (6 HSPs)
chr3 (274-348)||(35173945-35174019)
chr3 (1-38)||(3890976-3891013)
chr3 (3-36)||(8850841-8850874)
chr3 (3-36)||(11122559-11122592)
chr3 (1-38)||(33213763-33213800)
chr3 (3-39)||(29835478-29835514)
[»] chr2 (2 HSPs)
chr2 (1-38)||(7575458-7575495)
chr2 (1-38)||(10454512-10454549)
[»] chr6 (2 HSPs)
chr6 (3-38)||(5687368-5687403)
chr6 (1-38)||(954688-954725)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-38)||(5030-5067)
[»] chr8 (3 HSPs)
chr8 (1-38)||(13139511-13139548)
chr8 (1-38)||(18087699-18087736)
chr8 (1-38)||(40303419-40303456)
[»] chr1 (3 HSPs)
chr1 (1-38)||(34334172-34334209)
chr1 (1-38)||(51088457-51088494)
chr1 (1-37)||(36731603-36731639)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 222 - 351
Target Start/End: Original strand, 29259049 - 29259178
Alignment:
Q  222 catatgaacaccttcatcatcttcatcattctcttcttcgtcttcttccataaatcaaactctccaaatctcaattaaacttaaatttaccaaatcctga 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||    
T  29259049 catatgaacaccttcatcatcttcatcattctcttcttcgtcttcttccttaagtcaaactctccaaatctcagttaaacttaaatttatcaaatcctga 29259148  T
Q  322 aatagttccaaatcccaaactcatgaaaat 351  Q
    ||||||||||||||||||||||||||||||    
T  29259149 aatagttccaaatcccaaactcatgaaaat 29259178  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 29258870 - 29258947
Alignment:
Q  47 gtcccatttaagtcttttatctattaaaatatgcacnnnnnnnnnaaggaaggaattaaaatatgcacatgttagtcc 124  Q
    |||||||||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  29258870 gtcccatttaagtcatttatctattaaaatatgcacattttttttaaggaaggaattaaaatatgcacatgttagtcc 29258947  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 10256616 - 10256704
Alignment:
Q  259 tcgtcttcttccataaatcaaactctccaaatctcaattaaacttaaatttaccaaatcctgaaatagttccaaatcccaaactcatgaa 348  Q
    |||||||||||| ||| |||||||  ||| ||||||||||| ||||||| || |||| ||||||||||||||||| || |||||||||||    
T  10256616 tcgtcttcttccttaa-tcaaactgcccagatctcaattaaccttaaatatatcaaaccctgaaatagttccaaaccctaaactcatgaa 10256704  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 50530993 - 50531081
Alignment:
Q  259 tcgtcttcttccataaatcaaactctccaaatctcaattaaacttaaatttaccaaatcctgaaatagttccaaatcccaaactcatgaa 348  Q
    |||||||||||| ||| ||||| |  ||| ||||||||||| ||||||| || |||| ||||||||||||||||| || |||||||||||    
T  50530993 tcgtcttcttccttaa-tcaaagtgcccagatctcaattaaccttaaatatatcaaaccctgaaatagttccaaaccctaaactcatgaa 50531081  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 23418409 - 23418376
Alignment:
Q  3 tttatcttatttagttgtaacactttagtccttt 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  23418409 tttatcttatttatttgtaacactttagtccttt 23418376  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 55450498 - 55450461
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  55450498 cttttatcttatttatttgtaacactttggtcctttat 55450461  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 17519091 - 17519127
Alignment:
Q  2 ttttatcttatttagttgtaacactttagtcctttat 38  Q
    |||||||||||||| |||||||||||| |||||||||    
T  17519091 ttttatcttatttatttgtaacactttggtcctttat 17519127  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 34074836 - 34074800
Alignment:
Q  2 ttttatcttatttagttgtaacactttagtcctttat 38  Q
    |||||||||||||| |||||||||||| |||||||||    
T  34074836 ttttatcttatttatttgtaacactttggtcctttat 34074800  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 35174019 - 35173945
Alignment:
Q  274 aatcaaactctccaaatctcaattaaacttaaatttaccaaatcctgaaatagttccaaatcccaaactcatgaa 348  Q
    |||||||||  ||| ||||||||||| || |||| ||||||| |||||||||||| |||| || |||||||||||    
T  35174019 aatcaaactgcccagatctcaattaacctgaaatataccaaaccctgaaatagtttcaaaccctaaactcatgaa 35173945  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3890976 - 3891013
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  3890976 cttttatcttatttatttgtaacactttggtcctttat 3891013  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 8850874 - 8850841
Alignment:
Q  3 tttatcttatttagttgtaacactttagtccttt 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  8850874 tttatcttatttatttgtaacactttagtccttt 8850841  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 11122559 - 11122592
Alignment:
Q  3 tttatcttatttagttgtaacactttagtccttt 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  11122559 tttatcttatttatttgtaacactttagtccttt 11122592  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33213763 - 33213800
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  33213763 cttttatcttatttatttgtaacactttggtcctttat 33213800  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 29835514 - 29835478
Alignment:
Q  3 tttatcttatttagttgtaacactttagtcctttata 39  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  29835514 tttatcttatttatttgtaacactttggtcctttata 29835478  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7575495 - 7575458
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  7575495 cttttatcttatttatttgtaacactttagtcctttat 7575458  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10454512 - 10454549
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  10454512 cttttatcttatttatttgtaacacattagtcctttat 10454549  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 5687403 - 5687368
Alignment:
Q  3 tttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||| ||||||||||||||||||||||    
T  5687403 tttatcttatttatttgtaacactttagtcctttat 5687368  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 954725 - 954688
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  954725 cttttatcttatttatttgtaacactttggtcctttat 954688  T

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Target: scaffold0259 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5067 - 5030
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  5067 cttttatcttatttatttgtaacactttcgtcctttat 5030  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13139511 - 13139548
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  13139511 cttttatcttatttatttgtaacactttggtcctttat 13139548  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18087699 - 18087736
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  18087699 cttttatcttatttatttgtaacactttggtcctttat 18087736  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40303456 - 40303419
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  40303456 cttttatcttatttatttgtaacactttggtcctttat 40303419  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34334209 - 34334172
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  34334209 cttttatcttatttatttgtaacactttggtcctttat 34334172  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 51088494 - 51088457
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtcctttat 38  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  51088494 cttttatcttatttatttgtaacactttggtcctttat 51088457  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36731603 - 36731639
Alignment:
Q  1 cttttatcttatttagttgtaacactttagtccttta 37  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  36731603 cttttatcttatttatttgtaacactttggtccttta 36731639  T

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