View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_26 (Length: 306)
Name: NF14343_low_26
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 296
Target Start/End: Original strand, 27775849 - 27776124
Alignment:
| Q |
21 |
atttaatccatatggccgagggattcaatttgcactctgttgaatatgcgatttctgtgtctaaatcagactacacaacaacgagggctgtgtctagacg |
120 |
Q |
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| T |
27775849 |
atttaatccatatggccgagggattcaatttgcactctgttgaatatgcgatttctgtgtctaaatcagactacacaacaacgagggctgtgtctagacg |
27775948 |
T |
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| Q |
121 |
aaggggctagactcacaccacgtgatgaaccaaggttcggatcccaactgtgagaggtggtcacatttattgtccaacaatgcctcaaataggattactg |
220 |
Q |
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| T |
27775949 |
aaggggctagactcacaccacgtgatgaaccaaggttcggatcccaactgtgaaaggtggtcacatttattgtccaacaatgcctcaaataggattactg |
27776048 |
T |
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| Q |
221 |
catgtgaagggagccgatgggaaaccnnnnnnnttcagactacactcacctctatttataataggatgcagaataa |
296 |
Q |
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| T |
27776049 |
catgtgaagggagccgatgggaaaccaaaaaaattcagactacactcacctctatttataatagcatgcagaataa |
27776124 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 43784381 - 43784343
Alignment:
| Q |
255 |
tcagactacactcacctctatttataataggatgcagaa |
293 |
Q |
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| T |
43784381 |
tcagactacactcacctctattgataatagcatgcagaa |
43784343 |
T |
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