View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14343_low_27 (Length: 304)

Name: NF14343_low_27
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14343_low_27
NF14343_low_27
[»] chr5 (4 HSPs)
chr5 (15-111)||(33354627-33354724)
chr5 (15-111)||(33548669-33548766)
chr5 (193-276)||(33354466-33354549)
chr5 (194-291)||(33548853-33548950)


Alignment Details
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 33354724 - 33354627
Alignment:
Q  15 ctactccaccacctcctcctctgccccc-atcgaaatcgagcttcagcggattaaggctccgctgggccgtaatgtaagatggtcgaaatctttcaac 111  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  33354724 ctaccccaccacctcctcctctgccccccatcgaaattgagcttcagcgaattgaggctcagctgggccataatgtaagatggtcgaaatctttcaac 33354627  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 33548669 - 33548766
Alignment:
Q  15 ctactccaccacctcctcctctgcccc-catcgaaatcgagcttcagcggattaaggctccgctgggccgtaatgtaagatggtcgaaatctttcaac 111  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||  |||||||||||||    
T  33548669 ctaccccaccacctcctcctctaccccccatcgaaatcgagcttcagcggattgaggctcagctgggccgtaatgtaagatgggtgaaatctttcaac 33548766  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 33354549 - 33354466
Alignment:
Q  193 ccagcccggtgatggaagatatcttatggaannnnnnnagtttcttattcttgtgtgtcatttccttttagtcattgtatttct 276  Q
    ||||||||||||||||||||||||| |||||       |||||||||||||||| |||||||||||||||||||||||||||||    
T  33354549 ccagcccggtgatggaagatatcttgtggaatttttttagtttcttattcttgtctgtcatttccttttagtcattgtatttct 33354466  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 291
Target Start/End: Original strand, 33548853 - 33548950
Alignment:
Q  194 cagcccggtgatggaagatatcttatggaannnnnnnagtttcttattcttgtgtgtcatttccttttagtcattgtatttctctacgcccctatgat 291  Q
    ||||| ||||||||||||||||||||| |        |||||||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||    
T  33548853 cagcctggtgatggaagatatcttatgaattttttttagtttcttattcttgtctgtcatttccttttagtcattgtatttctccacacccctttgat 33548950  T

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