View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_28 (Length: 301)
Name: NF14343_low_28
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 29259560 - 29259826
Alignment:
| Q |
13 |
aatatagtaataaaagtggaaaaaagtatctgattagccttacttgaattttttagaaacggttatatggaaaaaatcttaa-tcagcattgttactgga |
111 |
Q |
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| T |
29259560 |
aatatagaaataaaagtggaaaaaataatttgattagccttacttgaattttttaaaaacggttatatgaaaaaaatcttaaatcagcaatgt------- |
29259652 |
T |
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| Q |
112 |
attatttacatctggatataactttaacacataattttgaacgcctaagactacaaggtaataatggaataagtggcttctctctcttcaattgtaattt |
211 |
Q |
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| T |
29259653 |
attatttacatctggatataacttttacacataattttgaacgcctaagactacaaggtaataatgaaataagtggcttctctctcttcaatagtaattt |
29259752 |
T |
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| Q |
212 |
tgtggatgaatcatgtttgcnnnnnnnnnnntgtttgcaataaaaacaacttattaattcaagtaatttagatgt |
286 |
Q |
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| T |
29259753 |
tgtggatgaatcatgtttgc-aaaaaaaaaatgtttgcaataaaaacaacttattaattcaagtaattgagatgt |
29259826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 10257047 - 10257107
Alignment:
| Q |
61 |
ttttttagaaacggttatatggaaaaaatcttaatcagcattgttactggaattatttacat |
122 |
Q |
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| T |
10257047 |
ttttttagaaatggttatatgaaaaatatctta-tcaatattgttactggaattatttacat |
10257107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 10257162 - 10257213
Alignment:
| Q |
178 |
gaataagtggcttctctctcttcaattgtaattttgtggatgaatcatgtttg |
230 |
Q |
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| T |
10257162 |
gaataagtgacttctct-tcttcaattgtaattttgttgatgaatcaagtttg |
10257213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 35173487 - 35173435
Alignment:
| Q |
178 |
gaataagtggcttctctctcttcaattgtaattttgtggatgaatcatgtttg |
230 |
Q |
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| T |
35173487 |
gaataagtgacttctctctcttcaattgtaattttgttgatgaatcaagtttg |
35173435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 50531424 - 50531484
Alignment:
| Q |
61 |
ttttttagaaacggttatatggaaaaaatcttaatcagcattgttactggaattatttacat |
122 |
Q |
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||||||||||| ||||||||| |||| |||||| ||| ||||||||||||||||||||||| |
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| T |
50531424 |
ttttttagaaatggttatatgaaaaatatctta-tcaatattgttactggaattatttacat |
50531484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 50531539 - 50531590
Alignment:
| Q |
178 |
gaataagtggcttctctctcttcaattgtaattttgtggatgaatcatgtttg |
230 |
Q |
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| T |
50531539 |
gaataagtgacttctct-tcttcaattgtaattttgttgatgaatcaagtttg |
50531590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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