View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_29 (Length: 295)
Name: NF14343_low_29
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 12992586 - 12992325
Alignment:
| Q |
16 |
aaaatacaaagcttaaaatcgtagagctaaacatctagcacttgaaagagcaaaacaaagaaaatgttcaattaaatagtaccttaaagaacaatagaac |
115 |
Q |
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| T |
12992586 |
aaaatacaaagcttaaaatcgtagagctaaacatctagcacttgaaagagcaaaacaaagaaaatgttcaattaaatagtaccttaaagaacaatagaac |
12992487 |
T |
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| Q |
116 |
aagcagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagagaagagtatctccaatctccactttgca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12992486 |
aagcagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagagaagagtatctccaatctccactttgca |
12992387 |
T |
|
| Q |
216 |
ttgttttatgaattgtctccaacctccagagaatctataaccatgaatactatcataataat |
277 |
Q |
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| T |
12992386 |
ttcttttatgaattgtctccaacctccagagaatctataaccatgaatactatcataataat |
12992325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 12956271 - 12956142
Alignment:
| Q |
111 |
agaacaagcagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagagaagagtatctccaatctccact |
210 |
Q |
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||||||| ||||||| ||||| |||||| |||||||||||||||||||||| || | |||||||||||||||| |||| ||||||||||||||||||| |
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| T |
12956271 |
agaacaaacagctaatggattctttcctgcaattgaaacatcaaacacaaattttcgttcatcaatcaacttaaggagacaagtatctccaatctccact |
12956172 |
T |
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| Q |
211 |
ttgcattgttttatgaattgtctccaacct |
240 |
Q |
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| T |
12956171 |
ttgcattctttcatgaactttctccaacct |
12956142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 12914468 - 12914597
Alignment:
| Q |
111 |
agaacaagcagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagagaagagtatctccaatctccact |
210 |
Q |
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||||||| ||||| | | ||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||| ||||||||||||||||||| |
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| T |
12914468 |
agaacaaacagcttatgtattctttcctacaattgaaacatcaaacacaaatttcctctcatcaattaacttaaaaagacaagtatctccaatctccact |
12914567 |
T |
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| Q |
211 |
ttgcattgttttatgaattgtctccaacct |
240 |
Q |
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| T |
12914568 |
ttgcctgctttcataaattgtctccaacct |
12914597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 12942848 - 12942728
Alignment:
| Q |
120 |
agctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagagaagagtatctccaatctccactttgcattgt |
219 |
Q |
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|||||| ||||| ||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||||||||| | |
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| T |
12942848 |
agctaatggattctttccaacaattgaaacatcaaacaaaaaaattctctcatcaatcaacttaaagagacaaatatctccaatctccactttgcatgct |
12942749 |
T |
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| Q |
220 |
tttatgaattgtctccaacct |
240 |
Q |
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|| || ||||||||||||||| |
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| T |
12942748 |
ttcataaattgtctccaacct |
12942728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 12921812 - 12921917
Alignment:
| Q |
135 |
tcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagagaagagtatctccaatctccactttgcattgttttatgaattgtctc |
234 |
Q |
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||||| || |||||||||||||||||| || ||||||||||| |||||||||||| ||||||||| ||||||||||||||| ||| ||||||| |||| |
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| T |
12921812 |
tcctataactgaaacatcaaacacaaattttctctcatcaattaacttaaagagacaagtatctccgatctccactttgcatgctttcatgaattttctc |
12921911 |
T |
|
| Q |
235 |
caacct |
240 |
Q |
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|||||| |
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| T |
12921912 |
caacct |
12921917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 248
Target Start/End: Original strand, 13000914 - 13001043
Alignment:
| Q |
119 |
cagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagagaagagtatctccaatctccactttgcattg |
218 |
Q |
| |
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||||||| || || ||| ||||||||||||||| ||||||||| || |||||||||||||||| |||||| ||||| ||||||||||||||||| |
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| T |
13000914 |
cagctaatgggttcttttctacaattgaaacattaaacacaaattttttctcatcaatcaacttcaagagacaagtatggagaatctccactttgcattc |
13001013 |
T |
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| Q |
219 |
ttttatgaattgtctccaacctccagagaa |
248 |
Q |
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||||||||| |||||||||||| ||||||| |
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| T |
13001014 |
ttttatgaactgtctccaacctgcagagaa |
13001043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 217
Target Start/End: Original strand, 12885292 - 12885416
Alignment:
| Q |
92 |
tagtaccttaaagaacaatagaacaagcagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagagaag |
191 |
Q |
| |
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||||| |||||||||||| | ||||| || |||| || || || |||| ||||||||||||||||||||| || |||||||| || | ||||||||| |
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| T |
12885292 |
tagtatcttaaagaacaacacaacaaacaactaatgggttctt-cctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagaca |
12885390 |
T |
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| Q |
192 |
agtatctccaatctccactttgcatt |
217 |
Q |
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|||||||||||||||||||||||||| |
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| T |
12885391 |
agtatctccaatctccactttgcatt |
12885416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 12950485 - 12950410
Alignment:
| Q |
141 |
aattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagagaagagtatctccaatctccactttgcat |
216 |
Q |
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||||||||||||||||||||| || || |||||||| ||| |||||||| ||| |||||||||| |||||||||| |
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| T |
12950485 |
aattgaaacatcaaacacaaatttcctttcatcaattaacctaaagagacaagtgtctccaatcttcactttgcat |
12950410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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