View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_3 (Length: 581)
Name: NF14343_low_3
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 9197806 - 9198386
Alignment:
| Q |
1 |
cattaaatcttggaaggtcttcatgacaggagcgggcaaaccaagaagcacattaatgcttctcctctcttgaccatgtgaaaggaacaaaatcacttcc |
100 |
Q |
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| T |
9197806 |
cattaaatcttggaagatcttcatgacaggagcaggcaaaccaagaagcacattaatgcttctcctctcttgaccatgtgaaaggaacaaaatcacttcc |
9197905 |
T |
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| Q |
101 |
ttctccggcaaggaaaccggtccagacagaaccggttccccccaaccgaaatcggtggtatgaaacggaagcctagaccaagttgtgatcaaaagtgtac |
200 |
Q |
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| T |
9197906 |
ttctccggcaaggaaaccggtccagacagaaccggttccccccaaccgaaatcggtggtatgaaacggaagcctagaccaagttgtgatcaaaagtgtac |
9198005 |
T |
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| Q |
201 |
aagccaaagaaggcctagctcttgttacctcaaaataatcaatagctgatctcatgtaactatcagtaaccatcttgattgcatcttgaataaccttcac |
300 |
Q |
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| T |
9198006 |
aagccaaagatggcctagctcttgttacctcaaaataatcaatagctgatctcatgtaactatcagtgaccatcttgattgcatcttgaataaccttcac |
9198105 |
T |
|
| Q |
301 |
cgtatacgaaaagggcttgttcgtaatttcacctgctttacaaacagcatttgttaaaataattccattcccaaaatacccttttggaagttttggttca |
400 |
Q |
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| T |
9198106 |
cgtatacgaaaagggcttgttcgtaatttcacctgctttacacacagcatttgttaaaataattccattcccaaaatacccttttggaagtttaggttca |
9198205 |
T |
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| Q |
401 |
aatttagcccttccatcaacagcaaaaagaagctttgtttcttgttctggcaacattttcagtgcttttgttcttgctatccaaacaaacgccgaaagca |
500 |
Q |
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| T |
9198206 |
aatttagcccttccatcaacagcaaaaagaagctttgtttcttgttctggcaacattttcagtgcttttgttcttgctatccaaacaaacgctgaaagca |
9198305 |
T |
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| Q |
501 |
cttcaaatgttgtacaagattcaagaacaccaccttcatcatctaaagcttttttcttcagttcttttagtttctcgggat |
581 |
Q |
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| T |
9198306 |
cttcaaatgttgtgcaagattcaagaacaccaccttcatcttctaaagcttttttcttcaattcttttagtttctcgggat |
9198386 |
T |
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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 45350411 - 45350506
Alignment:
| Q |
178 |
ccaagttgtgatcaaaagtgtacaagccaaagaaggcctagctcttgttacctcaaaataatcaatagctgatctcatgtaactatcagtaaccat |
273 |
Q |
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| T |
45350411 |
ccaagttgtaatcaaaagtgtgcctgttaaagaaggcctagctcttgtaacttcaaaataatcaatagcagatctcatataactatctgtaaccat |
45350506 |
T |
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