View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14343_low_31 (Length: 285)
Name: NF14343_low_31
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 40743228 - 40743506
Alignment:
| Q |
3 |
catgaaactatatcgttcaatttcaatttttcttaacgatttcttctttgtaaactcttgttaggttttttcttttgatgtaaattaggtatcctctgca |
102 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40743228 |
catgaaactatatcattcaatttcaatttttcttaacgatttcttctttgtaaactcttgttaggttttttcttttgatgtaaattaggtatcctccgca |
40743327 |
T |
|
| Q |
103 |
cgcaataatgaagacaattccttcgagtcttgtggacctaaatggacggcaaactcccctaagaatttttaatgctgctgcatgcctagataaactc--g |
200 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40743328 |
cgcaataataaagacaaatccttcgagtcttgtggacctaaatggacggcaaactcccctaagaatttttaatgctgctgcatgcctagataaactcttg |
40743427 |
T |
|
| Q |
201 |
ttaggttttaattctattaatgtgaaacttaattttcttcttcttcttttcaatacatcccctcatgcttagtataatt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40743428 |
ttaggttttaattctattaatgtgaaacttaattttcttcttcttcttttcaatacatcccctcatgcttagtacaatt |
40743506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University