View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_34 (Length: 270)
Name: NF14343_low_34
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 33355358 - 33355594
Alignment:
| Q |
10 |
ataatactaagaagacgacgaaaacaacaggtggtggtagtagtcgtgaggagcaattgcgtttctttaagaatcaatttcaatctctgccaagatcttc |
109 |
Q |
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| T |
33355358 |
ataataataagaagacgacgaaaacaacaggtggtggtggtagtcgtgaggagcaattgcgtttctttaagaatcaatttcaatctctgccaagatcttc |
33355457 |
T |
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| Q |
110 |
aactctcttccatcgagttggaatccctcaaaccagaaatagtaggtggtgttcataaagtgcttactaaaatgatttttaccacacatgatatgtgcgt |
209 |
Q |
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| T |
33355458 |
aactctcttctatcgagttggaatccctcaaaccagaaacaataggtggtgttcataaagagcttactaaaatgatttttaccacacatgatatgtgcgt |
33355557 |
T |
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| Q |
210 |
gcgtgcgcgcaagtgcgtgcatgcgtgtgttgtttat |
246 |
Q |
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| T |
33355558 |
gcgtgcgcgcaagtgcgtgcatgcgtgtgttgtttat |
33355594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 56 - 246
Target Start/End: Complemental strand, 33544183 - 33543993
Alignment:
| Q |
56 |
tgaggagcaattgcgtttctttaagaatcaatttcaatctctgccaagatcttcaactctcttccatcgagttggaatccctcaaaccagaaatagtagg |
155 |
Q |
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| T |
33544183 |
tgaggagcaattgcgtttctttaagaatcaatttcaatctctgccaagatcttcaactctcttctatcgagttggaatccctcaaaccagaaacaatacg |
33544084 |
T |
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| Q |
156 |
tggtgttcataaagtgcttactaaaatgatttttaccacacatgatatgtgcgtgcgtgcgcgcaagtgcgtgcatgcgtgtgttgtttat |
246 |
Q |
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| T |
33544083 |
tggtgttcataaagagcttactaaaatgatttttaccacacatgatatgtgtgtgcgtgcgcgcaagtgcgtgcatgcgtgttttgtttat |
33543993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 33548019 - 33547806
Alignment:
| Q |
27 |
acgaaaacaacaggtggtggtagtagtcgtgaggagcaattgcgtttctttaagaatcaatttcaatctctgccaagatcttcaactctcttccatcgag |
126 |
Q |
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| T |
33548019 |
acgaaaacaacaggtggtggtagtagtcgtgaggagcaattgcgtttctttaagaatcagtttcaatctctgccaagatcttcaactatcttctatcgag |
33547920 |
T |
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| Q |
127 |
ttggaatccctcaaaccagaaatagtaggtggtgttcataaagtgcttactaaaatgatttttaccacacatgatatgtgcgtgcgtgcgcgcaagtgcg |
226 |
Q |
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| T |
33547919 |
ttggaatccctcaaaccagaaacaata------gttcataaagagcttactaaaatgatttttaccacacatgatatgtgtgtgcgttcgtgcaagtgcg |
33547826 |
T |
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| Q |
227 |
tgcatgcgtgtgttgtttat |
246 |
Q |
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| T |
33547825 |
tgcatgcgtgtgttgtttat |
33547806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 36 - 246
Target Start/End: Complemental strand, 33547048 - 33546844
Alignment:
| Q |
36 |
acaggtggtggtagtagtcgtgaggagcaattgcgtttctttaagaatcaatttcaatctctgccaagatcttcaactctcttccatcgagttggaatcc |
135 |
Q |
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| T |
33547048 |
acaggtggtggtagtagtcgtgaggagcaattgcgtttctttaagaaccaatttcaatctctgccaagatcttcaactctcttctatcgagttggaatcc |
33546949 |
T |
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| Q |
136 |
ctcaaaccagaaatagtaggtggtgttcataaagtgcttactaaaatgatttttaccacacatgatatgtgcgtgcgtgcgcgcaagtgcgtgcatgcgt |
235 |
Q |
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| T |
33546948 |
ctcaaactagaaacaata------gttcataaagagcttactaaaataatttttaccacacatgatatgtgtgtgcgtgcgcgcaagtgcgtgcatgcgt |
33546855 |
T |
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| Q |
236 |
gtgttgtttat |
246 |
Q |
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| T |
33546854 |
gtgttgcttat |
33546844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 52862460 - 52862545
Alignment:
| Q |
60 |
gagcaattgcgtttctttaagaatcaatttcaatctctgccaa-gatcttcaactctcttccatcgagttggaatccctcaaaccaga |
146 |
Q |
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| T |
52862460 |
gagcaactgcgtttctttgtgaatgaatttcaatct--gccaatgatgttcaactctcttctatagagttggaatccctgaaagcaga |
52862545 |
T |
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