View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_36 (Length: 252)
Name: NF14343_low_36
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 40743050 - 40742889
Alignment:
| Q |
10 |
tctgaatttcattgaaaccattcaattgttacaagatgaaacaagatccctttttattaagacaaagagaaaataggagaataacaaaaaggaaactaac |
109 |
Q |
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| T |
40743050 |
tctgaatttcattgaaaccattcaattgttacaagatgaaacaagatccctttttattaagaca--gagaaaataggagaataacaaaaaggaaactaac |
40742953 |
T |
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| Q |
110 |
aaactgacagaatgaacaacaaaccagcagtgacagtccatgtaaccatgtgttaagtgtgttt |
173 |
Q |
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| T |
40742952 |
aaactgacagaatgaacaacaaaccagcagtgacagtccatgtaaccatgtgttaagtgtgttt |
40742889 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 236
Target Start/End: Complemental strand, 40742902 - 40742871
Alignment:
| Q |
205 |
tgttaagtgtgtttttcagaagaagaaagagg |
236 |
Q |
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| T |
40742902 |
tgttaagtgtgtttttcagaagaagaaagagg |
40742871 |
T |
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