View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_4 (Length: 531)
Name: NF14343_low_4
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Original strand, 24778003 - 24778516
Alignment:
| Q |
18 |
accaatgctactaagatctttgcaaatcctagcaaactcagcagatggcatcctaacaatggcatcatattcagcctctggaattccaaggtgctcacta |
117 |
Q |
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| T |
24778003 |
accaatgctactaagatctttgcaaatcctagcaaactcagcagatggcatcctaacaatggcatcatattcagcctctggaattccaaggtgctcacta |
24778102 |
T |
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| Q |
118 |
tcaatgtccatcagcttcatctcaaaatcagaaatcttgtcttgggcttcatcacataaccacnnnnnnnncaagtcaggaaattacactattaataaca |
217 |
Q |
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| T |
24778103 |
tcaatgtccatcagcttcatctcaaaatcagaaatcttgtcttgggcttcatcacataaccacaaaaaaaacaagccaggaaattacactattattaaca |
24778202 |
T |
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| Q |
218 |
tatgaaccgcaatggctacccaataaatcacaagtgataccaccacaaatatgataccaaaacatgaacagagcagacataaatcttacagaattaaaca |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24778203 |
tatgaaccgcaatggctacctaataaatcacaagtgataccaccacaaatatgataccaaaacatgaacagagcagacataaatcttacagaattaaaca |
24778302 |
T |
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| Q |
318 |
ctaaaacccttaaattcatcaaatacatcagttaagcatacccaaacaagaacagaggatacccaaatcatacagaatttaacaccaaaaccctgaaatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24778303 |
ctaaaacccttaaattcatcaaatacatcagttaagcatacccaaacaagaacagaggatacccaaatcatacagaatttaacaccaaaaccctgaaatt |
24778402 |
T |
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| Q |
418 |
aatcaaatagaccagttaagcatgcgaccgataacatgtagccctgaaattgaccaaagaatagctcacaagtcataagtgacaacacatcaaaggagat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
24778403 |
aatcaaatagaccagttaagcatgcgaccgataacatgtaaccctgaaattgaccaaaggctagctcacaagtcataagtgacaacacatcaaaagagat |
24778502 |
T |
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| Q |
518 |
gccaaaacatgaac |
531 |
Q |
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|||||||||||||| |
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| T |
24778503 |
gccaaaacatgaac |
24778516 |
T |
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