View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_7 (Length: 508)
Name: NF14343_low_7
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 35171254 - 35170764
Alignment:
| Q |
18 |
ataaccgttgcggctggtacaatcgatcgcacgtttggtagtttgaaactgggaagtggtgaaactattgttggttggactttgtttcctgctactaatg |
117 |
Q |
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| T |
35171254 |
ataaccgttgcggctggtacaatcgatcgcacgtttggtagtttgaaactgggaagtggtgaaactattgttggttggactttgtttcctgctactaatg |
35171155 |
T |
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| Q |
118 |
ctatagttgaaaatcttcaacttgtttacaacaaaactttatcatcgtgcgattcatatagtcttttaagtggagctgcaacaagagggattattgtttg |
217 |
Q |
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| T |
35171154 |
ctatagttgaaaatcttcaacttgtttacaacaaaactttatcatcgtgcgattcatatagtcttttaagtggagctgcaacaagagggattattgtttg |
35171055 |
T |
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| Q |
218 |
tgatgaattggaatcagtttcagttcttagccaaatcaattatgttaattgggcaggtgtagttggtgctgtttttatctcagaagatccaaaactgctt |
317 |
Q |
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| T |
35171054 |
tgatgaattggaatcagtttcagttcttagccaaatcaattatgttaattgggcaggtgtagttggtgctgtttttatctcagaagatccaaaactgctt |
35170955 |
T |
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| Q |
318 |
gaaacaggaacagttttttctccaagtattgttattagtccaaaagataaaaaagcacttatcaagtacataaaaagtgttaaatttccaactgctagca |
417 |
Q |
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| T |
35170954 |
gaaacaggaacagttttttctccaagtattgttattagtccaaaagataaaaaagcacttatcaagtacataaaaagtgttaaatttccaactgctagca |
35170855 |
T |
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| Q |
418 |
tcaattttcgacaaacattcgttggaacaaagccagcaccagctgctgcttattacagttcaagaggtccttcaaaaagctatccaagaat |
508 |
Q |
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| T |
35170854 |
tcaattttcgacaaacattcgttggaacaaagccagcaccagctgctgcttattacagttcaagaggtccttcaaaaagctatccaagaat |
35170764 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 503
Target Start/End: Original strand, 30099784 - 30099873
Alignment:
| Q |
414 |
agcatcaattttcgacaaacattcgttggaacaaagccagcaccagctgctgcttattacagttcaagaggtccttcaaaaagctatcca |
503 |
Q |
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| T |
30099784 |
agcatcaaatttcaacaaacatttgtaggaacaaagccggcaccagctgcagcatattactcatcaagaggtccttcacatagctatcca |
30099873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 30099428 - 30099518
Alignment:
| Q |
67 |
tgggaagtggtgaaactattgttggttggactttgtttcctgctactaatgctatagttgaaaatcttcaacttgtttacaacaaaactttatc |
160 |
Q |
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| T |
30099428 |
tgggaaatggtcaaagcattattggttggactttgtttccagcaa---atgctatagttgaaaatgttctacttgtttacaataacactttatc |
30099518 |
T |
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