View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_8 (Length: 482)
Name: NF14343_low_8
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 6134735 - 6134270
Alignment:
| Q |
1 |
atctaatttcaatccagtgtaaaacttataacttacttgacatgccaataatcttcggtgtgggttcatccattcatttgagtatgctaactctcaaata |
100 |
Q |
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||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6134735 |
atctactttcaatctagtgtaaaacttataactcacttgacatgccaataatcttcggtgtgggttcatccattcatttgagtatgctaactctcaaata |
6134636 |
T |
|
| Q |
101 |
gagaaagcttttgctttcacatacattgtaatcaaatcatcgactctaatataaccattggatcatgaagggagtctggatcaacatattagaatttaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6134635 |
gagaaagcttttgctttcacatacattgtaatcaaatcatcgactctaatataaccattggatcatgaagggagtctggatcaacatattagaatttaaa |
6134536 |
T |
|
| Q |
201 |
caaccacaaaagtggtttcattgctacatctttatccaaaaatttaagatattggatatacaatatcatctcacttatatgtagctcaacgtccattttc |
300 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6134535 |
caaccacacaagtggtttcattactacatctttatccaaaaatttaagatattgaatatacaatatcatctcacttatatgtagctcaacatccattttc |
6134436 |
T |
|
| Q |
301 |
atcaaatatgactcttcatcacacttgataatataaacaagaaggtatttcaagttcagcaatgtaaagtgaaaatgatagaaaatcttttgtaacaaac |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
6134435 |
atcaaatatgactcttcatcacacttgataatataaacaagaaggtatttcaagttcagcaatgtaaagtggaaataatagaaaatcttttgtaacaaac |
6134336 |
T |
|
| Q |
401 |
ttgatcacataaaagagttgataacataagataacaatataaaaaagaggtgatcaatattattgt |
466 |
Q |
| |
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| T |
6134335 |
ttgatcacataaaagagttgataacataagataacaatataaaaaagaggtgatcaatattattgt |
6134270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 466
Target Start/End: Complemental strand, 6121822 - 6121355
Alignment:
| Q |
7 |
tttcaatccagtgtaaaacttataacttacttgacatgccaataatcttcggtgtgggttcatccattcatttgagtatgctaactctcaaatagagaaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| | ||||| ||| ||| |
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| T |
6121822 |
tttcaatccagtgtaaaacttataactcacttgacatgccaataatcttcgatgtgagttcatctattcatttgagtatgctccccgtcaaacagaaaaa |
6121723 |
T |
|
| Q |
107 |
------gcttttgctttcacatacattgtaatcaaatcatcgactctaatataaccattggatcatgaagggagtctggatcaacatattagaatttaaa |
200 |
Q |
| |
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||||||| ||| |||||| | ||||||||| ||||| ||||||| ||||||||||| |||| |||||| ||||| ||||||||||| |||| |
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| T |
6121722 |
cttatagcttttgtattcgcatacactttaatcaaattatcgaatctaatacaaccattggattatgaggggagttctgatcaccatattagaatgtaaa |
6121623 |
T |
|
| Q |
201 |
caaccacaaaagtggtttcattgctacatctttatccaaaaa-tttaagatattggatatacaatatcatctcacttatatgtagctcaacgtccatttt |
299 |
Q |
| |
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|||||||| |||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||| ||| ||| ||||| ||||||| |||||||| |
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| T |
6121622 |
caaccacacaagtggtttcatcaataaatctttatccaaaaaatttaagatattggatatacaacatcttcttgcttgtatgttgctcaacatccatttt |
6121523 |
T |
|
| Q |
300 |
catcaaatatgactcttcatcacacttgataatataaacaagaaggtatttcaagttcagcaa-tgtaaagtgaaaatgatagaaaatcttttgtaacaa |
398 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6121522 |
catgaaatatgactcttcatcacacttgataatataaacaagaaggtatttcaagttcagcaaatgtaaagtgaaaatgatagaaaatcttttgtaacaa |
6121423 |
T |
|
| Q |
399 |
acttgatcacataaaagagttgataacataagataacaatataaaaaagaggtgatcaatattattgt |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
6121422 |
acttgatcacataaaagagttgataacataagataacaatataaaaaagaggtgagcaatattattgt |
6121355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 446
Target Start/End: Complemental strand, 6140960 - 6140888
Alignment:
| Q |
375 |
atgatagaaaatcttttgtaacaaacttgatcacat-aaaagagttgataacataagataacaatataaaaaa |
446 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| |||| || |||| ||||||| |||||||||||||| |
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|
| T |
6140960 |
atgatagaaaatcttttgtaacaaaagttatcacataaaaaaaggtgatcgcataagacaacaatataaaaaa |
6140888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 466
Target Start/End: Original strand, 7915248 - 7915377
Alignment:
| Q |
346 |
tatttcaagttcagcaatgtaaagt-gaaaatgatagaaaatcttttgtaacaaacttgatcacataa--------aagagttgataacataagataaca |
436 |
Q |
| |
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||||||||||||| ||| | ||||| ||||||||||| |||||||||||| |||| ||||||||||| ||||| |||| ||||||||||||| |
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| T |
7915248 |
tatttcaagttcaacaaggcaaagtagaaaatgatagcaaatcttttgtatcaaaagtgatcacataaaaaataagaagaggtgatcacataagataaca |
7915347 |
T |
|
| Q |
437 |
atataaaaaagaggtgatcaatattattgt |
466 |
Q |
| |
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||||| |||||||| | | |||||||||| |
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|
| T |
7915348 |
atatatcaaagaggtcaacgatattattgt |
7915377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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