View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14343_low_9 (Length: 473)
Name: NF14343_low_9
Description: NF14343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14343_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 147 - 463
Target Start/End: Original strand, 49057973 - 49058288
Alignment:
| Q |
147 |
cacgtactctgaaatcaattggtagatacacaaagtcataagttctttcatggtgttcatcaattgcagccaacaacatctcagaagtatacctgcaaca |
246 |
Q |
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| T |
49057973 |
cacgtactctgaaatcaattggtagatacacaaagtcataagttctttaatggcgttcatcaattgcagccaacaacatctcagaagtatacctgcaaca |
49058072 |
T |
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| Q |
247 |
agtcatagtcaagagaaatgagatttacnnnnnnnnttatttaaatcataatccaaaacataccaaatgaatatacaannnnnnngcattagagaatata |
346 |
Q |
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| T |
49058073 |
agtcatagtcaagagaaatgagatttacaaaaaaaattatttaaatcataatccaaaacataccaaatgaatatacaatttttttgcattagagaatata |
49058172 |
T |
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| Q |
347 |
tnnnnnnnnnnnnnnnnntaatacagcttacttgttaggaatgttcttaatcataagtgttgttcggttatcttcaccccttattatgcaatcaatatca |
446 |
Q |
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| T |
49058173 |
t-aaaaaaaaataaaaaataatacagcttacttgttaggaatgttcttaatcataagtgttgttcggttatcttcaccccttattatgcaatcaatatca |
49058271 |
T |
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| Q |
447 |
agctcataccgtttcat |
463 |
Q |
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| T |
49058272 |
agctcataccgtttcat |
49058288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 373 - 463
Target Start/End: Complemental strand, 6554372 - 6554282
Alignment:
| Q |
373 |
cttacttgttaggaatgttcttaatcataagtgttgttcggttatcttcaccccttattatgcaatcaatatcaagctcataccgtttcat |
463 |
Q |
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| T |
6554372 |
cttacttgttaggaatgttcttaatcataagtgttgttcggttatcttcgccccttttaatgcagtcaatatcaagttcatatcgtttcat |
6554282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 324
Target Start/End: Complemental strand, 6554588 - 6554411
Alignment:
| Q |
151 |
tactctgaaatcaattggtagatacacaaagtcataagttctttcatggtgttcatcaattgcagccaacaacatctcagaagtatacctgcaa------ |
244 |
Q |
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| T |
6554588 |
tactctgaaatcaattggtagatacacaaaatcataagctcctttatggtgttcatcgattgcagccaacagcatcttggaagtatacctgtaaatgatc |
6554489 |
T |
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| Q |
245 |
caagtcatagtcaagagaaatgagatttacnnnnnnnnttatttaaatcataatccaaaacataccaaatgaatatacaa |
324 |
Q |
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| T |
6554488 |
aaaatcttagtcaagagaaatgagatgt--taagaaaatgatttaaatcataatctaaaacataccaaatgaatatacaa |
6554411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 6554709 - 6554651
Alignment:
| Q |
18 |
atgttgatgaatgcatatccaacattgcatttgttctgcaatcaatgttgattcaatgt |
76 |
Q |
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| T |
6554709 |
atgttgatgaatgcatatccaacattgcatttgttctgcaatcaatgttgattccatgt |
6554651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 49057844 - 49057902
Alignment:
| Q |
18 |
atgttgatgaatgcatatccaacattgcatttgttctgcaatcaatgttgattcaatgt |
76 |
Q |
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| T |
49057844 |
atgttgatgaatgcatatccagcattgcatttgttctgcaatcaatgttgattcaatgt |
49057902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 40158350 - 40158384
Alignment:
| Q |
24 |
atgaatgcatatccaacattgcatttgttctgcaa |
58 |
Q |
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| T |
40158350 |
atgaatgcatatccaacattacatttgttctgcaa |
40158384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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