View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14344_high_1 (Length: 427)
Name: NF14344_high_1
Description: NF14344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14344_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 20426477 - 20426307
Alignment:
| Q |
18 |
caaatatatagcaaatatatcgtcaaaaagtttaaatattaaataggacaaaagtaaatcattttgtagactctttnnnnnnnnntcattttctagacaa |
117 |
Q |
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| T |
20426477 |
caaatatatagcaaatatatcgtcaaaaagtttaaatattaaataggacaaaagtaaatcattttgtagactctttcaaaaaaaatcattttctagacaa |
20426378 |
T |
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| Q |
118 |
aactttaattttcaatttatttgaattaaaaatatattaagaatattattaaatgaaatatgtcctttttg |
188 |
Q |
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| T |
20426377 |
aactttaattttcaatttatttgaattaaaaatatattaagaatattattaaatgaaatatgtcctttttg |
20426307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 412
Target Start/End: Complemental strand, 20426228 - 20426082
Alignment:
| Q |
267 |
gttcgattcaaaagtattagtattgaaagtaaattcataatttgtttgtgaatgtgnnnnnnnnnnnnnnnn-gtgctggtcggagttcgaagtccaaac |
365 |
Q |
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| T |
20426228 |
gttcaattcaaaagtattaggattgaaagtaaattcagaatttgtttgtgaatgtgtttttttttttttttttgtggtggtcgggattcgaagcccggac |
20426129 |
T |
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| Q |
366 |
cttacattttttatgcattgatcctaccaactaatttaaattcatga |
412 |
Q |
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| T |
20426128 |
cttacattttttatgcattgttcctaccaactaatttaaattcatga |
20426082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 20431736 - 20431651
Alignment:
| Q |
105 |
attttctagacaaaactttaattttc-aatttatttgaattaaaaatatat-taag--aatattattaaatgaaatatgtccttttt |
187 |
Q |
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| T |
20431736 |
attttctagacaaaatttaaattttttaatttatttgaactgaaaatatatataaggcaatat-attaaatgaaatatgtccttttt |
20431651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 5319228 - 5319055
Alignment:
| Q |
18 |
caaatatatagcaaatatatcgtcaaaaagtttaaatattaaataggacaaaagtaaatcattttgtagactctttnnnnnnnnn---tcattttctaga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5319228 |
caaatatatagcaaatatatcgtcaaaaagtttaaatattaaataggacaaaagtaaatcattttgtagactctttcaaaaaaaaaaatcattttctaga |
5319129 |
T |
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| Q |
115 |
caaaactttaattttcaatttatttgaattaaaaatatattaagaatattattaaatgaaatatgtcctttttg |
188 |
Q |
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| T |
5319128 |
caaagctttaattttcaatttatttgaattaaaaatatattaagaatattattaaatgaaatatgtcctttttg |
5319055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 5318976 - 5318921
Alignment:
| Q |
267 |
gttcgattcaaaagtattagtattgaaagtaaattcataatttgtttgtgaatgtg |
322 |
Q |
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| T |
5318976 |
gttcgattcaaatgtattagtattgaaagtaaattcataatttgtttgtgaatgtg |
5318921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 405
Target Start/End: Original strand, 38767029 - 38767090
Alignment:
| Q |
344 |
ggtcggagttcgaagtccaaaccttacattttttatgcattgatcctaccaactaatttaaa |
405 |
Q |
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| T |
38767029 |
ggtcggagtttgaaccccaaaccttacatatgttatgcattgttcctaccaactaatttaaa |
38767090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 5318897 - 5318843
Alignment:
| Q |
343 |
tggtcggagttcgaagtccaaaccttacattttttatgcattgatcctaccaact |
397 |
Q |
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||||||| |||||||| || ||||||||||||||||| |||| ||||||||||| |
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| T |
5318897 |
tggtcggggttcgaagcccggaccttacattttttatgtattgttcctaccaact |
5318843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 45701395 - 45701341
Alignment:
| Q |
343 |
tggtcggagttcgaagtccaaaccttacattttttatgcattgatcctaccaact |
397 |
Q |
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| T |
45701395 |
tggtcggaattcgaactccagaccttacatattttatgcattgttcataccaact |
45701341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 51046209 - 51046155
Alignment:
| Q |
343 |
tggtcggagttcgaagtccaaaccttacattttttatgcattgatcctaccaact |
397 |
Q |
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| T |
51046209 |
tggtcggagttcgaactccgaaccttacatattttatgtattgttcataccaact |
51046155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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