View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14344_high_3 (Length: 250)
Name: NF14344_high_3
Description: NF14344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14344_high_3 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 28179109 - 28178867
Alignment:
| Q |
5 |
tgtcgaagaaaatcataactgattttgcgaatgttgtgtcctttcgattaaagtacatatataatataacaagagacaaaataaaccaaagaaagtgagt |
104 |
Q |
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| T |
28179109 |
tgtcgaataaaatcataactgattttgcgaatgttgtgtcctttcgattaatgtacatatataatataacaagagacaaaataaaccaaagaaagtgagt |
28179010 |
T |
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| Q |
105 |
tattagacaatcaatatcataattgaaccattaatctttttggtacagattgattctccttttcactatacatacatatataataagttcatttttgtta |
204 |
Q |
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| T |
28179009 |
tattagacaatcaatatcagaattgaaccattaatccttttggtacagattgattctccttttcactatacatacata---cataagttcatttttgtta |
28178913 |
T |
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| Q |
205 |
tttgattatgatgccactacctaccttgagggcattgttggaatct |
250 |
Q |
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| T |
28178912 |
tttgattatgatgccactacctaccttgagggcattgttggaatct |
28178867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 28160424 - 28160364
Alignment:
| Q |
92 |
aaagaaagtgagttattagacaatcaatatcataattgaaccattaatctttttggtacag |
152 |
Q |
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| T |
28160424 |
aaaggaagtgagttattagacaatcaatatcctaattgaaccattaagctttttggtacag |
28160364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 28174193 - 28174125
Alignment:
| Q |
63 |
atataatataacaagagacaaaataaaccaaagaaagtgagttattagacaatcaatatcataattgaac |
132 |
Q |
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| T |
28174193 |
atataatataacaggagacaaaa-agaccaaagaaagtatgttattagacaaccaatatcccaattgaac |
28174125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 28169078 - 28169010
Alignment:
| Q |
154 |
ttgattctccttttcactatacatacata-tataataagttcatttttgttatttgattatgatgccac |
221 |
Q |
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| T |
28169078 |
ttgattctccttttcactatacatacatacaagcataggatcgtttttgttatttgattataatgccac |
28169010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 28177228 - 28177153
Alignment:
| Q |
63 |
atataatataacaagagacaaaataaaccaa--agaaagtgagttattagacaatcaatatcataattgaaccatt |
136 |
Q |
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| T |
28177228 |
atataatataacaggagacaaaaagagcaaagaagaaagtgtgttattagacaaccaatatcctaattgaaccatt |
28177153 |
T |
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