View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14344_low_1 (Length: 500)

Name: NF14344_low_1
Description: NF14344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14344_low_1
NF14344_low_1
[»] chr3 (6 HSPs)
chr3 (88-335)||(44940075-44940322)
chr3 (84-259)||(35424632-35424807)
chr3 (96-249)||(8426441-8426594)
chr3 (84-184)||(30812171-30812271)
chr3 (84-145)||(53179352-53179413)
chr3 (205-335)||(50663635-50663765)
[»] chr2 (4 HSPs)
chr2 (84-335)||(40262144-40262395)
chr2 (84-367)||(14820289-14820575)
chr2 (359-478)||(14819796-14819915)
chr2 (205-258)||(23357523-23357576)
[»] chr1 (5 HSPs)
chr1 (84-334)||(45709050-45709299)
chr1 (84-192)||(6463971-6464079)
chr1 (98-259)||(40821105-40821266)
chr1 (84-145)||(12467737-12467798)
chr1 (207-258)||(11052422-11052473)
[»] chr8 (2 HSPs)
chr8 (84-335)||(36122204-36122457)
chr8 (170-258)||(36646814-36646902)
[»] chr4 (4 HSPs)
chr4 (84-248)||(32238766-32238929)
chr4 (84-334)||(54152200-54152438)
chr4 (94-220)||(14071806-14071934)
chr4 (272-329)||(32238961-32239018)
[»] chr6 (2 HSPs)
chr6 (84-238)||(6208708-6208862)
chr6 (86-130)||(29409741-29409785)
[»] chr5 (3 HSPs)
chr5 (84-255)||(33954556-33954727)
chr5 (96-184)||(2430946-2431034)
chr5 (84-145)||(40495880-40495941)
[»] chr7 (1 HSPs)
chr7 (84-145)||(1554278-1554339)
[»] scaffold0018 (1 HSPs)
scaffold0018 (84-136)||(193212-193264)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 5e-85; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 88 - 335
Target Start/End: Original strand, 44940075 - 44940322
Alignment:
Q  88 tattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaatacc 187  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44940075 tattcataagaaattggggaagaaaacatggatatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagctaggaatacc 44940174  T
Q  188 agcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaagnnnnnnnntctgaaaaccacgtttgaaa 287  Q
    ||||||| ||||||| || |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||        ||||||||||||||||||||    
T  44940175 agcttctgttgtactgactttttgagatcaaaactgagtttcctgaaagcacttttcattcacccaaacaagaaaaaaaatctgaaaaccacgtttgaaa 44940274  T
Q  288 aagtaaagtcagatttagctgctaaaaaagtgatgccaaacacatact 335  Q
    ||||||| |||| |||||| ||| ||||||||||| ||||||||||||    
T  44940275 aagtaaactcagttttagccgctgaaaaagtgatgtcaaacacatact 44940322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 259
Target Start/End: Complemental strand, 35424807 - 35424632
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 183  Q
    ||||||||  ||||||||||| |||||||| ||| |||||||||||||||||||| |||| | ||||||| || |||||||| || ||| ||| ||||||    
T  35424807 tgtttattactaggaaattggagaagaaaacatgagtatattggtaactatacatgtcatagaaatcaaatctcagtttcaccaacgcaaaagctaggaa 35424708  T
Q  184 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaag 259  Q
    | ||  |||| | | ||| |||||||||   |||||| |||||||| ||||||  |||||||||||| ||||||||    
T  35424707 ttcctacttcaactataccaacgttttggtctcaaaactgagttttttgaaagtgcttttcattcacccaaacaag 35424632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 8426441 - 8426594
Alignment:
Q  96 ggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaataccagcttcta 195  Q
    ||||||||| |||||||| |||| ||||||||||||||||||| |||||  ||||||||| ||||||||||||  |||||| ||||||| || ||||       
T  8426441 ggaaattggagaagaaaagatggatatattggtaactatacatgtcatttaaatcaaaaccgagtttcacaaactcagaagctaggaattcctgctttag 8426540  T
Q  196 ttgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattca 249  Q
     |||||   ||||||||  |||||| |||||||| || |||| |||||||||||    
T  8426541 ctgtaccggcgttttgatctcaaaactgagttttttggaagcgcttttcattca 8426594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 30812171 - 30812271
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 183  Q
    ||||||||  ||||||||||| ||||||||||| ||||| ||||||||||||||| |||| | |||||||||| ||||||||||| ||| ||| ||||||    
T  30812171 tgtttattattaggaaattggagaagaaaatataggtatgttggtaactatacatgtcatagaaatcaaaactcagtttcacaaacgcaaaagctaggaa 30812270  T
Q  184 t 184  Q
    |    
T  30812271 t 30812271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 53179413 - 53179352
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattg 145  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||||||||| | ||||||    
T  53179413 tgtttattcatgggaaattggagaagaaaacatgggtatattggtaactatacttgtcattg 53179352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 50663765 - 50663635
Alignment:
Q  205 cgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaagnnnnnnnntctgaaaaccacgtttgaaaaagtaaagtcagattta 304  Q
    ||||||||||||||||   ||||||||  ||||||||||||||||| |||||||         |||| ||||  ||||||||||||||||   || |||     
T  50663765 cgttttgagatcaaaaccaagttttctataagcacttttcattcacccaaacaacacaacaaatctgcaaactgcgtttgaaaaagtaaaagtaggtttg 50663666  T
Q  305 gctgctaaaaaagtgatgccaaacacatact 335  Q
    ||  ||||||| ||| |||||||||||||||    
T  50663665 gcgactaaaaacgtgttgccaaacacatact 50663635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 5e-85; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 84 - 335
Target Start/End: Original strand, 40262144 - 40262395
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 183  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||    
T  40262144 tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaaactaggaa 40262243  T
Q  184 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaagnnnnnnnntctgaaaaccacgttt 283  Q
    ||||||||| | ||||||| ||||||||||||||||| ||||||| |||| |||||||||||||| | ||||||||        |||| |||||||||||    
T  40262244 taccagcttatgttgtactgacgttttgagatcaaaactgagtttcctgatagcacttttcattctcccaaacaagaaaaaaaatctggaaaccacgttt 40262343  T
Q  284 gaaaaagtaaagtcagatttagctgctaaaaaagtgatgccaaacacatact 335  Q
    ||||||||||| |||| ||| ||| |||||||||||||||||||||||||||    
T  40262344 gaaaaagtaaactcaggtttggctactaaaaaagtgatgccaaacacatact 40262395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 84 - 367
Target Start/End: Complemental strand, 14820575 - 14820289
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggta----tattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagtta 179  Q
    ||||||||||||| |||||||||||||||| |||||||    ||||||||||||||||| ||||||||||||||| ||||||||||||||||| | | ||    
T  14820575 tgtttattcatagaaaattggggaagaaaacatgggtacgtatattggtaactatacatgtcattgtaatcaaaattgagtttcacaaaagcatatgcta 14820476  T
Q  180 ggaataccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaagnnnnnnnntctgaaaaccac 279  Q
    |||||| |||||||| ||| |||  |||||||||||||||| ||||||| | ||||||||||||||||||| ||||||||        | || ||| |||    
T  14820475 ggaatatcagcttctgttgcactggcgttttgagatcaaaactgagtttcccgaaagcacttttcattcacccaaacaagaaaaaaatt-tggaaaacac 14820377  T
Q  280 gtttgaaaaagtaaagtcagatttagctgctaaaaaagtgatgccaaacacatactaaatatagtaactcttccaactaaaatttaaa 367  Q
    |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  14820376 gtttgaaaaagtaaagtcaggtttggctgctaaaaaagtgatgccgaacacatactaaatatagtacctcttccaactaaaatttaaa 14820289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 359 - 478
Target Start/End: Complemental strand, 14819915 - 14819796
Alignment:
Q  359 aaatttaaatcctgattcatcatgttttggaattttaatctcttccgcctgattcaaccacaattggtacgatgttatttatttacgttgtacctaactt 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14819915 aaatttaaatcctgattcatcatgttttggaattttaatctcttccgcctgattcaaccacaattggtacgatattatttatttacgttgtacctaactt 14819816  T
Q  459 ttctttttgatgaacctaac 478  Q
    ||||||||||||||||||||    
T  14819815 ttctttttgatgaacctaac 14819796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 23357576 - 23357523
Alignment:
Q  205 cgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaa 258  Q
    ||||||||  |||||| |||||||| || ||||||||||||||||| |||||||    
T  23357576 cgttttgatctcaaaactgagttttttggaagcacttttcattcacccaaacaa 23357523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 7e-84; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 84 - 334
Target Start/End: Complemental strand, 45709299 - 45709050
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 183  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  45709299 tgtttattcatgggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagctaggaa 45709200  T
Q  184 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaagnnnnnnnntctgaaaaccacgttt 283  Q
    ||||||||||| |||||||  | |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||        |||| |||||||||||    
T  45709199 taccagcttctgttgtactggccttttgagatcaaaactgagtttcctgaaagcacttttcattcacccaaacaag-aaaaaaatctggaaaccacgttt 45709101  T
Q  284 gaaaaagtaaagtcagatttagctgctaaaaaagtgatgccaaacacatac 334  Q
    ||||||||||| |||| ||| |||||| |||||||||||||||||||||||    
T  45709100 gaaaaagtaaactcagttttggctgctgaaaaagtgatgccaaacacatac 45709050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 6464079 - 6463971
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 183  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||    
T  6464079 tgtttattcataggaaattggggaagaaaacataggtatattggtaactatacatgtcattgtaatcaaaactgagtttctcaaaagcagaagctagaaa 6463980  T
Q  184 taccagctt 192  Q
    |||||||||    
T  6463979 taccagctt 6463971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 98 - 259
Target Start/End: Complemental strand, 40821266 - 40821105
Alignment:
Q  98 aaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaataccagcttctatt 197  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||| ||| ||||  ||||||| |||| |||  || ||||||||||||||||  ||    
T  40821266 aaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatgaaaatcgagtttcccaaacgcaatagctaggaataccagcttcagtt 40821167  T
Q  198 gtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaag 259  Q
    ||||   |||||||||||||||| ||||||| ||| | ||||||||||||||| ||||||||    
T  40821166 gtacacgcgttttgagatcaaaactgagtttcctggacgcacttttcattcacccaaacaag 40821105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 12467798 - 12467737
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattg 145  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||||||||| | ||||||    
T  12467798 tgtttattcatgggaaattggagaagaaaacatgggtatattggtaactatacttgtcattg 12467737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 11052422 - 11052473
Alignment:
Q  207 ttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaa 258  Q
    ||||||||||||||  |||||||||| | ||||||||||||||| |||||||    
T  11052422 ttttgagatcaaaaccgagttttctggacgcacttttcattcacccaaacaa 11052473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 84 - 335
Target Start/End: Original strand, 36122204 - 36122457
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 183  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||    
T  36122204 tgtttattcataagaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaattgagtttcacaaaagcagaagttaagaa 36122303  T
Q  184 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaac--aagnnnnnnnntctgaaaaccacgt 281  Q
    ||||||||||| ||||| |  |||||||||||||||| ||||||| |||||||||||||| |||||| |||||  ||         |||| |||||||||    
T  36122304 taccagcttctgttgtattggcgttttgagatcaaaactgagtttcctgaaagcactttttattcacccaaacaaaaaaaaaaaaatctggaaaccacgt 36122403  T
Q  282 ttgaaaaagtaaagtcagatttagctgctaaaaaagtgatgccaaacacatact 335  Q
    |||||||||| || |||  ||| ||| |||||||||||||||||||||||||||    
T  36122404 ttgaaaaagtgaactcacgtttcgcttctaaaaaagtgatgccaaacacatact 36122457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 36646902 - 36646814
Alignment:
Q  170 gcagaagttaggaataccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaa 258  Q
    ||||||| |||||||||||||||| |    |||| |||||||   |||||| ||||||||||| | || |||||||||||| |||||||    
T  36646902 gcagaagctaggaataccagcttcaacacaactagcgttttggtctcaaaactgagttttctggacgcgcttttcattcacccaaacaa 36646814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 84 - 248
Target Start/End: Original strand, 32238766 - 32238929
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 183  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  32238766 tgtttattcataggaaattggg-aagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagctaggaa 32238864  T
Q  184 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattc 248  Q
    ||||||||||| |||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  32238865 taccagcttctgttgtactgtcgttttgagatcaaaactgagttttctgaaagcacttttcattc 32238929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 84 - 334
Target Start/End: Complemental strand, 54152438 - 54152200
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 183  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||    
T  54152438 tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatatatgtcattgtaatcaaaactgagtttcacaaaagcagaagctaggaa 54152339  T
Q  184 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaac--aagnnnnnnnntctgaaaaccacgt 281  Q
    ||||| ||||| ||||||              ||||| ||||||| ||||||| ||||||||||||| |||||  ||         ||||||||||||||    
T  54152338 taccaacttctgttgtac--------------caaaactgagtttcctgaaagtacttttcattcacccaaacaaaaaaaaaaaaatctgaaaaccacgt 54152253  T
Q  282 ttgaaaaagtaaagtcagatttagctgctaaaaaagtgatgccaaacacatac 334  Q
    || |||||||||| |||  ||| |||||| |||||||||||||||||||||||    
T  54152252 ttaaaaaagtaaactcaattttggctgctgaaaaagtgatgccaaacacatac 54152200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 14071934 - 14071806
Alignment:
Q  94 taggaaattggggaagaaaatatggg--tatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaataccagct 191  Q
    ||||||||||| |||||||| |||||  ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || ||||| |||||    
T  14071934 taggaaattggagaagaaaacatgggggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaagcagaagctatgaatatcagct 14071835  T
Q  192 tctattgtactaacgttttgagatcaaaa 220  Q
    ||  ||||| |  ||||||||||||||||    
T  14071834 tcagttgtaatggcgttttgagatcaaaa 14071806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 32238961 - 32239018
Alignment:
Q  272 aaaaccacgtttgaaaaagtaaagtcagatttagctgctaaaaaagtgatgccaaaca 329  Q
    |||||||||||||||||| |||| | || ||| |||| ||||||||||||| ||||||    
T  32238961 aaaaccacgtttgaaaaaataaacttaggtttggctgttaaaaaagtgatgtcaaaca 32239018  T

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Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 84 - 238
Target Start/End: Original strand, 6208708 - 6208862
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6208708 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 6208807  T
Q  184 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagca 238  Q
    ||||||||||| |||||||  | |||||||||||||| ||||||| |||||||||    
T  6208808 taccagcttctgttgtactggctttttgagatcaaaactgagtttcctgaaagca 6208862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 29409741 - 29409785
Alignment:
Q  86 tttattcataggaaattggggaagaaaatatgggtatattggtaa 130  Q
    ||||||||||||||||||  ||| |||| ||||||||||||||||    
T  29409741 tttattcataggaaattgtagaataaaacatgggtatattggtaa 29409785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 33954556 - 33954727
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 183  Q
    ||||||||  ||||||||||  |||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || | |    
T  33954556 tgtttattagtaggaaattgaagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaagcagaagctatgga 33954655  T
Q  184 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaa 255  Q
    || |||||||  ||||| |   |||||||||||||||    |||| ||| ||| ||||||||||||| ||||    
T  33954656 tatcagcttcagttgtaatggtgttttgagatcaaaaccacgtttcctggaagtacttttcattcacccaaa 33954727  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 2430946 - 2431034
Alignment:
Q  96 ggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaat 184  Q
    ||||||||| |||||||| ||||||||||||||||||||| || |||||  ||||||||| ||||||||||||  |||||| |||||||    
T  2430946 ggaaattggagaagaaaagatgggtatattggtaactatagatgtcatttaaatcaaaaccgagtttcacaaactcagaagctaggaat 2431034  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 40495880 - 40495941
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattg 145  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||||||||| | ||||||    
T  40495880 tgtttattcatgggaaattggagaagaaaacatgggtatattggtaactatacttgtcattg 40495941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 1554339 - 1554278
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattg 145  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||||||| | ||||||    
T  1554339 tgttaattcatagaaaattggagaagaaaacatgggtatattggtaactatacttttcattg 1554278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 193264 - 193212
Alignment:
Q  84 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatac 136  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||| |||||    
T  193264 tgtttattcatgggaaattggagaagaaaacatgggtatattggtaattatac 193212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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