View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14344_low_3 (Length: 358)
Name: NF14344_low_3
Description: NF14344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14344_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 32948727 - 32948402
Alignment:
| Q |
18 |
agcagggccagtcatttatggaacattatctatacatacatgttctgccttagctttcacgctatttaaactaaccagaaaatatgcaccttaattaaaa |
117 |
Q |
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| T |
32948727 |
agcagggccagtcatttatggaacattatctatacatacatgttctgccttagctttcacgctatttaaactaaccagaaaatatgcaccttaattaaaa |
32948628 |
T |
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| Q |
118 |
tttgtctactactatttgcctatagtggacaccactactcatacaatattggttccatttttggcccttaaagttttggttagtgtattattggttcttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32948627 |
tttgtctactactatttgcctatagtggacaccactactcatacaatattggttccatttttggcccttaaagttttggttagtgtattattggttcttt |
32948528 |
T |
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| Q |
218 |
caattaatcgaatgtcaacaccctttactataaccaaattatatgaaaaattctatacgaatcgtcacatttacatcagccatatagaagaatgatatat |
317 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32948527 |
caattaatcgaatgtcaacaccctatattataaccaaattatatgaaaaattctatacgaatcgtcacatttacatcagccatatagaagaatgatatat |
32948428 |
T |
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| Q |
318 |
attatcacaaatcacattgaagattt |
343 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32948427 |
attatcacaaatcacattgaagattt |
32948402 |
T |
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