View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14344_low_4 (Length: 272)

Name: NF14344_low_4
Description: NF14344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14344_low_4
NF14344_low_4
[»] chr2 (10 HSPs)
chr2 (16-272)||(28178571-28178827)
chr2 (166-268)||(28170958-28171060)
chr2 (170-264)||(28152815-28152910)
chr2 (158-243)||(28160244-28160329)
chr2 (166-222)||(27994025-27994080)
chr2 (166-222)||(28080558-28080613)
chr2 (160-210)||(28129008-28129057)
chr2 (189-222)||(27988175-27988208)
chr2 (189-222)||(28074708-28074741)
chr2 (166-223)||(28181130-28181187)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 28178571 - 28178827
Alignment:
Q  16 acaatgacaatgataactcgtgtacaacaacaaaaaacagctttgaaacataaacaatgttggtaacgagattttacatgaatgagaacaatgttattaa 115  Q
    |||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  28178571 acaatgacaacgatgactcgtgtaccacaacaaaaaacagctttgaaacataaacaatgttggtaacgagattttacatgaatgagaataatgtaattaa 28178670  T
Q  116 gtttcaagaaagtgtcctcgattcactgtaacttgtataatcatcacaagttggttttatagataagtttatattctctgtttcacaaaccacccgatgt 215  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28178671 gtttcaataaagtgtcctcgattcactgtaacttgtataatcatcacaagttggttttatagataagtttattttctctgtttcacaaaccacccgatgt 28178770  T
Q  216 gggacttaacttattagtttaaagagtgtactcactctcactttatagttgtcggtc 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28178771 gggacttaacttattagtttaaagagtgtactcactctcactttatagttgtcggtc 28178827  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 28170958 - 28171060
Alignment:
Q  166 ttggttttatagataagtttatattctctgtttcacaaaccacccgatgtgggacttaacttattagtttaaagagtgtactcactctcactttatagtt 265  Q
    ||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |||||||    
T  28170958 ttggttttataaataagtttattttctctgttccacaaaacacccgatgtgggacttatcttattattttgaagagtgtactcactctcactctatagtt 28171057  T
Q  266 gtc 268  Q
    |||    
T  28171058 gtc 28171060  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 28152815 - 28152910
Alignment:
Q  170 ttttatagataagtttatattctctgtttcacaaaccacccgatgtgggacttaacttattagtttaaagagtgtactcact-ctcactttatagt 264  Q
    |||||||||| ||||||| ||||||||| |||||| |||||||||||||||||  ||||||| ||| ||||||||||||||| |||||| ||||||    
T  28152815 ttttatagatgagtttattttctctgttccacaaaacacccgatgtgggacttctcttattattttgaagagtgtactcactactcactctatagt 28152910  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 28160244 - 28160329
Alignment:
Q  158 atcacaagttggttttatagataagtttatattctctgtttcacaaaccacccgatgtgggacttaacttattagtttaaagagtg 243  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||| | ||||||| ||| |||||||    
T  28160244 atcacacgttggttttatagataagtttattttctctgttgcacaaacctcccgatatgggactaatcttattattttgaagagtg 28160329  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 27994080 - 27994025
Alignment:
Q  166 ttggttttatagataagtttatattctctgtttcacaaaccacccgatgtgggactt 222  Q
    |||||||||||||||||||  | |||| ||||||| |||||||||||||||||||||    
T  27994080 ttggttttatagataagttagttttct-tgtttcagaaaccacccgatgtgggactt 27994025  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 28080613 - 28080558
Alignment:
Q  166 ttggttttatagataagtttatattctctgtttcacaaaccacccgatgtgggactt 222  Q
    |||||||||||||||||||  | |||| ||||||| |||||||||||||||||||||    
T  28080613 ttggttttatagataagttagttttct-tgtttcagaaaccacccgatgtgggactt 28080558  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 28129008 - 28129057
Alignment:
Q  160 cacaagttggttttatagataagtttatattctctgtttcacaaaccaccc 210  Q
    |||| ||||||||||||||||| ||||| |||| |||||||||||||||||    
T  28129008 cacacgttggttttatagataactttat-ttctatgtttcacaaaccaccc 28129057  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 27988208 - 27988175
Alignment:
Q  189 ttctctgtttcacaaaccacccgatgtgggactt 222  Q
    |||||||||||||||||||| |||||||||||||    
T  27988208 ttctctgtttcacaaaccactcgatgtgggactt 27988175  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 28074741 - 28074708
Alignment:
Q  189 ttctctgtttcacaaaccacccgatgtgggactt 222  Q
    |||||||||||||||||||| |||||||||||||    
T  28074741 ttctctgtttcacaaaccactcgatgtgggactt 28074708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 28181130 - 28181187
Alignment:
Q  166 ttggttttatagataagtttatattctctgtttcacaaaccacccgatgtgggactta 223  Q
    ||||||||||||||||  | || ||||||||||  |||||||| ||||||||||||||    
T  28181130 ttggttttatagataacatcattttctctgttttgcaaaccactcgatgtgggactta 28181187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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