View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14344_low_7 (Length: 231)
Name: NF14344_low_7
Description: NF14344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14344_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 7316866 - 7316657
Alignment:
| Q |
1 |
actttggttgttcaagacaatttttaacattactctcttaatttaaatttgtatcattgctctctataaaaataaaaaattgtttgttaatatgatattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7316866 |
actttggttgttcaagacaatttttaacattactctcttaatttaaatttgtatcattgatctctataaaaa---aaaattgtttgttaatatgatattt |
7316770 |
T |
|
| Q |
101 |
gaaactnnnnnnntctaaatgtctattcaaatatttgataatattgaatgacattaacgtcacaaatttaggaactacattgaaaaactatttaaaaatt |
200 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7316769 |
gaaactaaaaaaatctaaatgtctattcaa---tttgataatattcaatgacattaacgtcacaaatttaggaactacattgaaaaactatttaaaaatt |
7316673 |
T |
|
| Q |
201 |
atacatagtgacagtg |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7316672 |
atacatagtgacagtg |
7316657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University