View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14344_low_8 (Length: 222)

Name: NF14344_low_8
Description: NF14344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14344_low_8
NF14344_low_8
[»] chr8 (5 HSPs)
chr8 (15-156)||(27083197-27083338)
chr8 (156-206)||(27083083-27083133)
chr8 (42-134)||(30261292-30261384)
chr8 (33-121)||(6900513-6900601)
chr8 (40-129)||(23941926-23942015)
[»] scaffold0112 (1 HSPs)
scaffold0112 (15-141)||(16019-16145)
[»] chr1 (2 HSPs)
chr1 (39-156)||(34854081-34854198)
chr1 (30-140)||(37139558-37139668)
[»] chr3 (5 HSPs)
chr3 (40-130)||(38926392-38926482)
chr3 (39-133)||(18369396-18369490)
chr3 (47-140)||(36708483-36708576)
chr3 (40-136)||(9163571-9163667)
chr3 (40-140)||(26009640-26009740)
[»] chr2 (4 HSPs)
chr2 (40-130)||(8066668-8066758)
chr2 (39-140)||(36803510-36803611)
chr2 (40-130)||(35487453-35487543)
chr2 (33-126)||(43782465-43782558)
[»] chr7 (4 HSPs)
chr7 (38-134)||(18670774-18670870)
chr7 (30-134)||(38780682-38780786)
chr7 (32-140)||(5326369-5326477)
chr7 (39-140)||(41339123-41339224)
[»] chr6 (3 HSPs)
chr6 (40-127)||(33804392-33804479)
chr6 (30-140)||(24749246-24749356)
chr6 (40-121)||(26010489-26010570)
[»] chr4 (1 HSPs)
chr4 (40-134)||(50451683-50451777)
[»] chr5 (3 HSPs)
chr5 (15-90)||(5596813-5596888)
chr5 (40-130)||(29094948-29095038)
chr5 (38-140)||(34311796-34311898)
[»] scaffold0014 (1 HSPs)
scaffold0014 (38-140)||(72143-72245)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 27083338 - 27083197
Alignment:
15 aatattgtaacctctgttccccgactgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcaga 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |||||||||||||  ||||||||||||||||||||||    
27083338 aatattgtaacctctgttcctcgactgttagataaggttaaattgttatccataggatgactgaaagttaaaaatgtcatgtttgtttttcgtactcaga 27083239  T
115 ggtggtgatcaagccctttaacttgtccttgcattgactaac 156  Q
    |||||||||||||||||||| ||||||  |||||||||||||    
27083238 ggtggtgatcaagccctttagcttgtctgtgcattgactaac 27083197  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 27083133 - 27083083
Alignment:
156 cacaccttgttcttgggaattgctctttactgttgttatataattccattt 206  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||    
27083133 cacaccttgtgcttgggaactgctctttactgttgttatataattccattt 27083083  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 30261384 - 30261292
Alignment:
42 ttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagcccttta 134  Q
    ||||||||||||||||||||||| | | | | ||| |||| ||||||||  || ||||||||| ||||||||  |||||| ||||||||||||    
30261384 ttagataaggttaaattgttatctcaagggtaactgaaagctaaaaatgtcatatttgtttttggtactcagtagtggtggtcaagcccttta 30261292  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 6900601 - 6900513
Alignment:
33 ccccgactgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtg 121  Q
    ||||| |||||||| ||||||||||||| ||| ||| | ||||| ||||  |||||||  |||||||||||| | || |||||||||||    
6900601 ccccgtctgttagacaaggttaaattgtgatctctagggtgactgaaagccaaaaatgtcatgtttgtttttggcacgcagaggtggtg 6900513  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 23942015 - 23941926
Alignment:
40 tgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagcc 129  Q
    ||||||||||||| |||||||||||  ||   ||||| |||| |||||| || |||||||||| | |||| ||||| ||||| |||||||    
23942015 tgttagataaggtcaaattgttatctttagagtgactgaaagctaaaaaggcaatgtttgtttatggtacgcagagatggtggtcaagcc 23941926  T

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Target: scaffold0112 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 16019 - 16145
Alignment:
15 aatattgtaacctctgttccccgactgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcaga 114  Q
    ||||||||||||| ||||||||| || ||||||||||| ||||||||| | ||| | || || |||| ||| ||||  |||||||||||| |||  ||||    
16019 aatattgtaacctatgttccccgtctattagataaggtcaaattgttagctctagggtggctgaaagctaagaatgtcatgtttgtttttggtatacaga 16118  T
115 ggtggtgatcaagccctttaacttgtc 141  Q
    ||||||| |||||||||||| ||||||    
16119 ggtggtggtcaagccctttagcttgtc 16145  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 156
Target Start/End: Original strand, 34854081 - 34854198
Alignment:
39 ctgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccctttaactt 138  Q
    |||||||||||||||||||||||||| ||| | || || |||| |||||| || |||||||||||| ||||  |||||||||| ||||| ||||||  ||    
34854081 ctgttagataaggttaaattgttatctctagggtggctgaaagctaaaaaggccatgtttgtttttggtacgtagaggtggtggtcaagtcctttagatt 34854180  T
139 gtccttgcattgactaac 156  Q
    |||   ||||||||||||    
34854181 gtctgggcattgactaac 34854198  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 37139558 - 37139668
Alignment:
30 gttccccgactgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagcc 129  Q
    |||||||| |||||| ||||||| |||||||||||  ||  ||| || ||||  ||||||| ||||||||| ||| | || ||||||||||| |||||||    
37139558 gttccccgtctgttatataaggtgaaattgttatcgttagtatggctgaaagccaaaaatgttatgtttgtgtttggcacgcagaggtggtggtcaagcc 37139657  T
130 ctttaacttgt 140  Q
    |||||||||||    
37139658 ctttaacttgt 37139668  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 38926482 - 38926392
Alignment:
40 tgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccc 130  Q
    ||||||||||||| |||||||||||  || | || || ||||||||||| ||||||||||||| | |||| ||||||||||| ||||||||    
38926482 tgttagataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctatgtttgtttatggtacgcagaggtggtggtcaagccc 38926392  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 18369396 - 18369490
Alignment:
39 ctgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagcccttt 133  Q
    ||||||||||||||||||||||||||  || | || || |||| |||||| ||| ||||||| | | |||| ||||||||||| |||||||||||    
18369396 ctgttagataaggttaaattgttatctttaggttggctgaaagctaaaaaggctgtgtttgtctatggtacgcagaggtggtggtcaagcccttt 18369490  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 36708576 - 36708483
Alignment:
47 taaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccctttaacttgt 140  Q
    ||||||||||||||||||  |  | || || |||| |||||||| | ||||||||| | |||| ||||| ||||| |||||||||||| |||||    
36708576 taaggttaaattgttatctttggggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtcaagccctttagcttgt 36708483  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 9163571 - 9163667
Alignment:
40 tgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccctttaac 136  Q
    |||| |||||| |||||||||||||  || | || || |||| ||||||  | |||||||||| | ||||||||| |||||| ||||| ||||||||    
9163571 tgttggataagattaaattgttatctttagggtggctgaaagctaaaaaaaccatgtttgtttatggtactcagatgtggtggtcaagtcctttaac 9163667  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 26009740 - 26009640
Alignment:
40 tgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccctttaacttg 139  Q
    |||||||||| |||||||| |||||  || | || || ||||  ||||||| ||||||||||||| | || | ||||||||| |||| ||||||| ||||    
26009740 tgttagataaagttaaattattatctttaaggtggctgaaagccaaaaatgttatgtttgtttttggcacgccgaggtggtggtcaaaccctttagcttg 26009641  T
140 t 140  Q
    |    
26009640 t 26009640  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 8066668 - 8066758
Alignment:
40 tgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccc 130  Q
    ||||||||||||| |||||||||||  || | || || |||||||||||  | |||||||||||| |||| ||||||||||| ||||||||    
8066668 tgttagataaggtcaaattgttatctttagggtggctgaaagttaaaaagacaatgtttgtttttggtacgcagaggtggtggtcaagccc 8066758  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 36803611 - 36803510
Alignment:
39 ctgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccctttaactt 138  Q
    ||||||||||| ||||||||||||||  || | || || ||||  |||||||  |||||||||||| | || ||||||||||| |||||| |||||||||    
36803611 ctgttagataaagttaaattgttatcattaggttggctgaaagcaaaaaatgtcatgtttgtttttggcacgcagaggtggtggtcaagctctttaactt 36803512  T
139 gt 140  Q
    ||    
36803511 gt 36803510  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 35487543 - 35487453
Alignment:
40 tgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccc 130  Q
    ||||||||||||| |||||||||||  || | || || |||| ||||||||||||| |||||| | |||  ||||||||||| ||||||||    
35487543 tgttagataaggtcaaattgttatctttagggtggctaaaagctaaaaatgctatgcttgtttatggtatgcagaggtggtggtcaagccc 35487453  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 43782465 - 43782558
Alignment:
33 ccccgactgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaa 126  Q
    ||||| |||||||| ||||||||||||||||| |||   || |||||||  |||||||  |||||||||||| | || ||||||||||| ||||    
43782465 ccccgtctgttagacaaggttaaattgttatctctagagtggcttaaagccaaaaatgtaatgtttgtttttggcacgcagaggtggtggtcaa 43782558  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 18670870 - 18670774
Alignment:
38 actgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagcccttta 134  Q
    |||||||||||||||||||||||||||  || | || || |||| |||||| | | ||||||||| | |||| ||||||||||| |||| |||||||    
18670870 actgttagataaggttaaattgttatctttagggtggctgaaagctaaaaaggttgtgtttgtttatggtacgcagaggtggtggtcaaacccttta 18670774  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 38780682 - 38780786
Alignment:
30 gttccccgactgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagcc 129  Q
    ||||||| ||| ||||||||||||||||||||||| ||| | |  || |||| ||| ||||  |||||||||||| ||||||| |||||||| | || ||    
38780682 gttcccctacttttagataaggttaaattgttatctctagggtcgctgaaagctaataatgtcatgtttgtttttggtactcataggtggtggttaaacc 38780781  T
130 cttta 134  Q
    |||||    
38780782 cttta 38780786  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 5326477 - 5326369
Alignment:
32 tccccgactgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccct 131  Q
    |||||| |||||||| ||||||||||||||||| ||| | ||| | ||||  || ||||  |||||||||||| | || || | |||||| |||||||||    
5326477 tccccgcctgttagacaaggttaaattgttatctctagggtgattgaaagccaacaatgtcatgtttgtttttggcacacatatgtggtggtcaagccct 5326378  T
132 ttaacttgt 140  Q
    ||| |||||    
5326377 ttagcttgt 5326369  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 41339224 - 41339123
Alignment:
39 ctgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccctttaactt 138  Q
    |||||||| ||||||||||||||||| ||| | || || ||||  || ||||  |||||||||||| | || || | |||||| |||||| |||||||||    
41339224 ctgttagacaaggttaaattgttatctctagggtggctgaaagccaacaatgtcatgtttgtttttggcacgcatatgtggtggtcaagctctttaactt 41339125  T
139 gt 140  Q
    ||    
41339124 gt 41339123  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 33804479 - 33804392
Alignment:
40 tgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaag 127  Q
    |||| |||||| |||||||||||||  || | || ||||||| ||||||||| |||||||||| | ||||||||| |||||| |||||    
33804479 tgttggataagattaaattgttatcattagggtggcttaaagctaaaaatgccatgtttgtttatggtactcagatgtggtggtcaag 33804392  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 24749356 - 24749246
Alignment:
30 gttccccgactgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagcc 129  Q
    |||||||| |||||||| ||| ||||||||||||| ||| | || || |||   |||||| | |||||||||||| | |||||||| || || |||||||    
24749356 gttccccgtctgttagacaagattaaattgttatctctagggtggctgaaaaccaaaaataccatgtttgtttttggcactcagagatgatggtcaagcc 24749257  T
130 ctttaacttgt 140  Q
    ||||| |||||    
24749256 ctttagcttgt 24749246  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 26010570 - 26010489
Alignment:
40 tgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtg 121  Q
    |||||||||||||||||||||||||  |  | || ||||||| |||||||| | ||||||||| | |||| ||||| |||||    
26010570 tgttagataaggttaaattgttatctttggggtggcttaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtg 26010489  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 50451777 - 50451683
Alignment:
40 tgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagcccttta 134  Q
    |||||||||||||||||||||||||  || || | || |||| |||||| | | ||||||||| | |||| ||||||||||| |||| |||||||    
50451777 tgttagataaggttaaattgttatctttaggagggctgaaagctaaaaaggttgtgtttgtttatggtacgcagaggtggtggtcaaacccttta 50451683  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 5596813 - 5596888
Alignment:
15 aatattgtaacctctgttccccgactgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatg 90  Q
    |||||||||||  |||||||||| |||||||||||| | ||||||||||| ||| | ||| | || ||||||||||    
5596813 aatattgtaacacctgttccccgtctgttagataagatcaaattgttatctctagggtgattgaaggttaaaaatg 5596888  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 29094948 - 29095038
Alignment:
40 tgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccc 130  Q
    ||||||||||||| |||||||||||  || | ||  | ||||||||||| | | ||||||||| | |||| ||||||||||| ||||||||    
29094948 tgttagataaggtcaaattgttatctttagggtggttgaaagttaaaaaggttgtgtttgtttatggtacgcagaggtggtggtcaagccc 29095038  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 34311898 - 34311796
Alignment:
38 actgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccctttaact 137  Q
    |||||||||||||||||||||||||||  |  | || || |||| ||||| || | ||||||||| | |||| ||||| ||||| |||| ||||||| ||    
34311898 actgttagataaggttaaattgttatctttggggtggctgaaagataaaactgttgtgtttgtttatggtacgcagagatggtggtcaaaccctttagct 34311799  T
138 tgt 140  Q
    |||    
34311798 tgt 34311796  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 72143 - 72245
Alignment:
38 actgttagataaggttaaattgttatccctatgatgacttaaagttaaaaatgctatgtttgtttttcgtactcagaggtggtgatcaagccctttaact 137  Q
    |||||||||||||||||||||||||||  |  | ||| | |||| |||||||| | ||||||||| | |||  ||||| ||||| |||| ||||||| ||    
72143 actgttagataaggttaaattgttatctttggggtgattgaaagctaaaaatgttgtgtttgtttatggtatgcagagttggtggtcaaaccctttagct 72242  T
138 tgt 140  Q
    |||    
72243 tgt 72245  T

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