View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14345_low_1 (Length: 553)
Name: NF14345_low_1
Description: NF14345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14345_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 51 - 539
Target Start/End: Complemental strand, 42095897 - 42095386
Alignment:
| Q |
51 |
caaatataatagtcgataaatagctctttagaaaacaagtata----acttgatctacttca---------------ttcttttttggaatccgactcag |
131 |
Q |
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| T |
42095897 |
caaatataatagtcgataaatagctctttagaaaacaagtatagagtacttgatctacttcaatttacagtgcttcattcttttttggaatccgagtcag |
42095798 |
T |
|
| Q |
132 |
ctccaatgatgcactttaatagccccgcgtgaaaccattgatttaattttgctacaatttggcaatgatttattctgctgcttaatactcctatttgcct |
231 |
Q |
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| T |
42095797 |
ctccaatgatgcactttaatagccccgcgtgaaaccattgatttaattttgctacaatttggcaatgatttattctgctgcttaatactcctatttgcct |
42095698 |
T |
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| Q |
232 |
tcaagtcgcatctttccctcttaaaaaatttccttttcatatgtatggtaataatgataatgataatgattataacattaaaacacagctgaaatcaata |
331 |
Q |
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| T |
42095697 |
tcaagttgcatctttccctcttaaaaaatttccttttcatatgtatggtaacaatgataatgat------tataacattaaaacacagctgaaatcaata |
42095604 |
T |
|
| Q |
332 |
gcatgatcatag---------tcgttttgggtaatgattcatatggacacttcactataaataaacatcactagcctcatctacatttcaattcaatcat |
422 |
Q |
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| T |
42095603 |
gcatgatcataggagactgcctcgttttgggtaatgattcatatggacacttcactataaataaacatcactagcctcatctacatttcaattcaatcat |
42095504 |
T |
|
| Q |
423 |
catatagatttctttatctgaataatttagcaatgatgagatattgttttcttttgcttgtatcactt-ttattctcaacacttcattgtcatctggata |
521 |
Q |
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| T |
42095503 |
catatagatttctttatctgaataatttagcaatgatgagatattgttttcttttgcttgtatcacttgttattctcaacacttcattgtcatctggata |
42095404 |
T |
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| Q |
522 |
cacatctagggttgatgg |
539 |
Q |
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| T |
42095403 |
cacatctagggttgatgg |
42095386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 523
Target Start/End: Complemental strand, 39691784 - 39691713
Alignment:
| Q |
453 |
caatgatgagatattgttttcttttgcttgtatcactttta-ttctcaacacttcattgtcatctggataca |
523 |
Q |
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| T |
39691784 |
caatgatgagatatggttttgttttgattgtatcaatgctagttctcagcacttcattgtcatctgcataca |
39691713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 523
Target Start/End: Original strand, 39703737 - 39703808
Alignment:
| Q |
453 |
caatgatgagatattgttttcttttgcttgtatcactttta-ttctcaacacttcattgtcatctggataca |
523 |
Q |
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| T |
39703737 |
caatgatgagatatggttttgttttgattgtatcaatgctagttctcagcacttcattgtcatctgcataca |
39703808 |
T |
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