View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14345_low_2 (Length: 469)
Name: NF14345_low_2
Description: NF14345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14345_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 10050061 - 10049579
Alignment:
| Q |
1 |
cttatcttgggatagaactaatcaatagcaaagttatgcaaatttacaatgcatagataggattaaatgacttt--caatcttagctactcaaatattaa |
98 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10050061 |
cttatcttaggatagaactaatcaatagcaaagttatgcaaatttacaatgcatagataggattaaatgactttatcaatcttagctactcaaatattaa |
10049962 |
T |
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| Q |
99 |
tgtcttgtaggaagagctcattttctaatgnnnnnnnaccaacggat-------------aaactttgtatttctgatggaattttcaatggtatttctt |
185 |
Q |
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| T |
10049961 |
tgtcttgtaggaagagctcattttctaatgtttttt-accaacggatccaacttgttggtaaactttgtatttctgatggaattttcaatggtatttctt |
10049863 |
T |
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| Q |
186 |
agacagtccaaaaattgaattcagaaattcacttttaccgttgaacagtttagattcatatcatgaatataataatgatcatttgttaatatgctttgca |
285 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10049862 |
agacagtccaaaaattgaattcagaaatccacttttaccgttgaacagtttagattcatatcatgaatataataatgatcatttgttaatttgctttgca |
10049763 |
T |
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| Q |
286 |
tctaatggcaaaattaggcatgtcccttaaccatataagggaactaatatcaagttcaagtctttttgttcatatttttacaccatcatttatgtaatga |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10049762 |
tctaatggcaaaattaggcatgtcccttaaccatataagggaactaatatcaagttcaagtctttttgttcatatttttacaccatcagttatgtaatga |
10049663 |
T |
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| Q |
386 |
agtcgatcaacacacacatggtggatcttttgtttaagaataaggttaatagttcattagaaattaaaattgtgtaatttgccc |
469 |
Q |
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| T |
10049662 |
agtcgatcaacacacacatggtggatcttttgtttaagaataaggttaatagttcattagaaattaaaattgtgtaatttgccc |
10049579 |
T |
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