View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14345_low_3 (Length: 469)

Name: NF14345_low_3
Description: NF14345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14345_low_3
NF14345_low_3
[»] chr4 (22 HSPs)
chr4 (11-456)||(2391146-2391591)
chr4 (197-453)||(2381521-2381777)
chr4 (198-436)||(2380274-2380512)
chr4 (11-453)||(2382630-2383069)
chr4 (11-164)||(2380558-2380713)
chr4 (10-122)||(2381814-2381928)
chr4 (214-346)||(2533992-2534124)
chr4 (284-347)||(2621399-2621462)
chr4 (214-337)||(2547223-2547346)
chr4 (284-405)||(2525504-2525625)
chr4 (214-323)||(2367923-2368032)
chr4 (284-324)||(12124594-12124634)
chr4 (284-329)||(2361217-2361262)
chr4 (284-413)||(2467294-2467423)
chr4 (292-329)||(2486064-2486101)
chr4 (377-409)||(2376407-2376439)
chr4 (283-324)||(2373488-2373529)
chr4 (212-253)||(12124522-12124563)
chr4 (292-347)||(2393829-2393885)
chr4 (370-414)||(2477421-2477465)
chr4 (214-254)||(2625588-2625628)
chr4 (292-324)||(12126658-12126690)
[»] chr5 (1 HSPs)
chr5 (279-336)||(41900496-41900553)


Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 2391591 - 2391146
Alignment:
Q  11 atcatcaccatctaggttattcttctcctctgaaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaactaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391591 atcatcaccatctaggttattcttctcctctgaaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaactaat 2391492  T
Q  111 ctttcggagtttgggaagtgccaaaaaatgattatcttcatctagcacaaaatcgaacttcctagcagaagtgtaatcagtgcagtctgtttccttgaga 210  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2391491 ctttcggagtttgggaagtgccaaaaaattattatcttcatctagcacaaaatcgaacttcctagcagaagtgtaatcactgcagtctgtttccttgaga 2391392  T
Q  211 acaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttca 310  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||    
T  2391391 acaagttcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccaaaaaaattcggaacaagtaagagaggtcaaatttttca 2391292  T
Q  311 tctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtggagatttgggtaag 410  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2391291 tctttttggacaaagctcggaacccatctttagggattttgtagaagttggaaagaatgagcgatctgaggactaaagggaaagtggagatttgggtaag 2391192  T
Q  411 aagcgtgttggggtgattgtgttgagagaagtaattgaggttggtg 456  Q
    ||||||||||||| |||||  |||||||||||||||||||||||||    
T  2391191 aagcgtgttggggcgattgcattgagagaagtaattgaggttggtg 2391146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 197 - 453
Target Start/End: Complemental strand, 2381777 - 2381521
Alignment:
Q  197 ctgtttccttgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagaga 296  Q
    |||||| ||||||||| |||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||       |||  |||||||||||||    
T  2381777 ctgttttcttgagaacgagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcagaacaagtaagaga 2381678  T
Q  297 ggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtg 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||  | || ||||| | |||||||||| |||||||||||||||||| |    
T  2381677 ggtcaaatttttcatctttttggacaaagctcggaacccatctttagggattttaaaaaacttggagaaaatgagcgatttgaggtctaaagggaaagcg 2381578  T
Q  397 gagatttgggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttg 453  Q
    |||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||    
T  2381577 gagatttgggtaagaagcatgttggggtgattgtgtagagaaaagtaagtgaggttg 2381521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 198 - 436
Target Start/End: Complemental strand, 2380512 - 2380274
Alignment:
Q  198 tgtttccttgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagag 297  Q
    ||||||||||||||| ||| |||||||| |||||||||||||| |||||||| | ||||||||||| |||||||       || ||||||  | | |||     
T  2380512 tgtttccttgagaacgagtacttcaagtgaagggaagcaatcagcaatgaagtaaatatccttcttattgatccaagtaattttgaaacacatgaaagaa 2380413  T
Q  298 gtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtgg 397  Q
    |||||||||||||||||||||||||||| ||| || |||| ||| || |||||| ||| |||||| |||||||||||| |||| |||||||| |||| ||    
T  2380412 gtcaaatttttcatctttttggacaaaggtcgcaatccatttttcgggattttgaagaggttggagagaatgagcgatttgagatctaaaggtaaagcgg 2380313  T
Q  398 agatttgggtaagaagcgtgttggggtgattgtgttgag 436  Q
    ||||||| ||||||||||||||| ||||||||| |||||    
T  2380312 agatttgtgtaagaagcgtgttgaggtgattgtattgag 2380274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 11 - 453
Target Start/End: Complemental strand, 2383069 - 2382630
Alignment:
Q  11 atcatcaccatctaggttattcttctcctctg--aaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaacta 108  Q
    ||||| |||||||| |||||||||||||||||  ||||||| | ||||  || | ||||||| ||||| |||||||||||||  || |||||||||| ||    
T  2383069 atcattaccatctaagttattcttctcctctgtgaaaggtccacggtttttgcgaagataattaataatttggctatcgatggaattaccatacaaatta 2382970  T
Q  109 atctttcggagtttgggaagtgccaaaaaatgattatcttcatctagcacaaaatcgaacttcctagcagaagtgta---atcagtgcagtctgtttcct 205  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  || |||| || ||||| |||   | |   |||   ||||||||    
T  2382969 atctttcggagtttgggaagtgccaaaaattgattatcatcatctagcacaaaataaaagttccaagtagaagggtactgacctacgcatcatgtttcct 2382870  T
Q  206 tgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatt 305  Q
    ||||||| ||| | || ||||||||||||||||   |||||||  ||||||||||||   | ||         || ||||||| | | ||| ||||| ||    
T  2382869 tgagaacgagtacatcgagtaaagggaagcaattggcaatgaaatagatatccttctacgtaat---------tttgaaacaaatgaaagaagtcaattt 2382779  T
Q  306 tttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtggaga-tttg 404  Q
    |||||||||||||||||||||||| || |||| | || | |||||| ||| |||||| |||||||| ||| |||| ||||||||  ||   |||| ||||    
T  2382778 tttcatctttttggacaaagctcgcaatccatttatatggattttgaagaggttggagagaatgagtgatttgagatctaaaggtgaaacagagattttg 2382679  T
Q  405 ggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttg 453  Q
      |||||||||||||| ||| ||||| ||||||||||| | ||||||||    
T  2382678 cataagaagcgtgttgaggtaattgtattgagagaagtgagtgaggttg 2382630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 2380713 - 2380558
Alignment:
Q  11 atcatcaccatctaggttattcttctcctc--tgaaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaacta 108  Q
    ||||| |||||||| |||||||||||||||  ||||||||| | ||||  || ||||||||| ||||| |||||||||||||   | |||||||||||||    
T  2380713 atcattaccatctaagttattcttctcctccgtgaaaggtccacggtttttgcggagataattaataatttggctatcgatggagttaccatacaaacta 2380614  T
Q  109 atctttcggagtttgggaagtgccaaaaaatgattatcttcatctagcacaaaatc 164  Q
    |||||||||||||| |||||||| ||||| | |||||| ||||||||| |||||||    
T  2380613 atctttcggagttttggaagtgctaaaaatttattatcatcatctagctcaaaatc 2380558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 2381928 - 2381814
Alignment:
Q  10 catcatcaccatctaggttattcttctcctctg--aaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaact 107  Q
    |||||| |||||||| ||||||||||| |||||  ||||||| | ||||| || ||||||||| ||||||||||| ||| |||| |  ||||  ||||||    
T  2381928 catcattaccatctaagttattcttctactctgtgaaaggtccacggttgttgcggagataattaataaattggcgatcaatgtaaataccacgcaaact 2381829  T
Q  108 aatctttcggagttt 122  Q
    |||||||||||||||    
T  2381828 aatctttcggagttt 2381814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 214 - 346
Target Start/End: Original strand, 2533992 - 2534124
Alignment:
Q  214 agttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatct 313  Q
    |||||||||||||||||||| |||||| |||| ||||||| ||| |||||||||||         ||   ||||||| ||||| || |||||||||||||    
T  2533992 agttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcatct 2534091  T
Q  314 ttttggacaaagctcggaacccatctttaggaa 346  Q
    | |||||||||||||||||| ||| || |||||    
T  2534092 tcttggacaaagctcggaactcattttcaggaa 2534124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 2621462 - 2621399
Alignment:
Q  284 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaat 347  Q
    ||||||| ||||| |||||||||||||| |||||||| |||||||| ||||||||| |||||||    
T  2621462 aacaagtgagagatgtcaaatttttcatatttttggagaaagctcgcaacccatctgtaggaat 2621399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 337
Target Start/End: Original strand, 2547223 - 2547346
Alignment:
Q  214 agttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatct 313  Q
    |||||||||||||||||||| |||||| |||||||||| | ||| |||||| ||||         || | ||||| | ||||| ||||||||||||||||    
T  2547223 agttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcatct 2547322  T
Q  314 ttttggacaaagctcggaacccat 337  Q
    |||  ||||||||||| |||||||    
T  2547323 tttcagacaaagctcgcaacccat 2547346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 405
Target Start/End: Original strand, 2525504 - 2525625
Alignment:
Q  284 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtc 383  Q
    ||||||| ||||| |||||||||||||| || ||||||||| | || ||| ||| || |||||  |||  |  || | | ||| |||||||| |||||||    
T  2525504 aacaagtgagagatgtcaaatttttcattttcttggacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtc 2525603  T
Q  384 taaagggaaagtggagatttgg 405  Q
    ||||||||||||||||||||||    
T  2525604 taaagggaaagtggagatttgg 2525625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 2368032 - 2367923
Alignment:
Q  214 agttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatct 313  Q
    |||||||| ||||||||||| |||||| |||||||||||| |||  ||||||  || |       | || ||||||||||||||||||| |||||||||     
T  2368032 agttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtgaatactaatcattccggaacaagtaagagaggtcaagtttttcatcc 2367933  T
Q  314 ttttggacaa 323  Q
    ||||||||||    
T  2367932 ttttggacaa 2367923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 12124594 - 12124634
Alignment:
Q  284 aacaagtaagagaggtcaaatttttcatctttttggacaaa 324  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  12124594 aacaagtgagagaggtcaaatttttcatctttttggacaaa 12124634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 2361262 - 2361217
Alignment:
Q  284 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcg 329  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcg 2361217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 413
Target Start/End: Original strand, 2467294 - 2467423
Alignment:
Q  284 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtc 383  Q
    ||||||| || || |||||||||||||||| |||||| |||||||| |||||||||  |||||   |   |  || | | ||| |||| ||| |||||||    
T  2467294 aacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtc 2467393  T
Q  384 taaagggaaagtggagatttgggtaagaag 413  Q
     ||||||||||||||||||| |||||||||    
T  2467394 caaagggaaagtggagattttggtaagaag 2467423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 2486064 - 2486101
Alignment:
Q  292 agagaggtcaaatttttcatctttttggacaaagctcg 329  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  2486064 agagatgtcaaatttttcatctttttggacaaagctcg 2486101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 2376439 - 2376407
Alignment:
Q  377 tgaggtctaaagggaaagtggagatttgggtaa 409  Q
    |||||||||||||||||||||||||||||||||    
T  2376439 tgaggtctaaagggaaagtggagatttgggtaa 2376407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 2373529 - 2373488
Alignment:
Q  283 aaacaagtaagagaggtcaaatttttcatctttttggacaaa 324  Q
    |||||||| ||||||||||||| ||||||||||| |||||||    
T  2373529 aaacaagtgagagaggtcaaatatttcatcttttcggacaaa 2373488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 12124522 - 12124563
Alignment:
Q  212 caagttcttcaagtaaagggaagcaatcaacaatgaagaaga 253  Q
    |||||||||| ||||||||||| |||||| ||||||||||||    
T  12124522 caagttcttctagtaaagggaaacaatcagcaatgaagaaga 12124563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 2393885 - 2393829
Alignment:
Q  292 agagaggtcaaattttt-catctttttggacaaagctcggaacccatctttaggaat 347  Q
    ||||| ||||||||||| |||||||| |||||||||||| ||||||| |||| ||||    
T  2393885 agagatgtcaaattttttcatcttttgggacaaagctcgcaacccatttttatgaat 2393829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 2477421 - 2477465
Alignment:
Q  370 agcgatctgaggtctaaagggaaagtggagatttgggtaagaagc 414  Q
    |||||||||||||||| ||  |||||||| |||||||||||||||    
T  2477421 agcgatctgaggtctatagctaaagtggatatttgggtaagaagc 2477465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 2625628 - 2625588
Alignment:
Q  214 agttcttcaagtaaagggaagcaatcaacaatgaagaagat 254  Q
    |||||||| ||||||||||| ||||||||||| ||||||||    
T  2625628 agttcttcgagtaaagggaaacaatcaacaataaagaagat 2625588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 12126658 - 12126690
Alignment:
Q  292 agagaggtcaaatttttcatctttttggacaaa 324  Q
    |||||||||||||||||||||| ||||||||||    
T  12126658 agagaggtcaaatttttcatctgtttggacaaa 12126690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 41900553 - 41900496
Alignment:
Q  279 ttcgaaacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaaccca 336  Q
    |||| ||||||| |||||||||||| || | ||||||||||| |||||||| ||||||    
T  41900553 ttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 41900496  T

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