View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_high_10 (Length: 444)
Name: NF14346_high_10
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 30600563 - 30600226
Alignment:
| Q |
8 |
ccaagaatattttagttctacgccaacaatatttcagttgtcaatgttagagtggctattgtatttgtttagctagtgaggcagaaaatgggaccctcct |
107 |
Q |
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| T |
30600563 |
ccaacaatatttcagttctacgccaacaatatttcagttgtcaatgttagagtggctgttgtatttgtttagctagtgaggcagaaaatgggaccctcct |
30600464 |
T |
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| Q |
108 |
aattcatgttttaaagatatcaagatggatgaaagtgagaattcaggggtcccatgtgaatggaaacctatactataaatgaaggactttttcgtctttc |
207 |
Q |
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| T |
30600463 |
aattcatgttttaaagatatcaagatggatgaatgtgagaattcaggggtcccatgtgaatggaaacctatactataaatgaaggactttttcgtctttc |
30600364 |
T |
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| Q |
208 |
catttattttgaccaccctagtagtagtagtactatagtcaccctcagtccactgctgacagcagtaagagatctttgcatagattccatgccaatgcca |
307 |
Q |
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| T |
30600363 |
catttattttgaccaccctagtagtagtagtactatagtcaccctcagtccacggctgactgcagtaagagatctttgcatagattccatgccaatgcca |
30600264 |
T |
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| Q |
308 |
tattttcatgcatgtttccggtgatgcatctatcacta |
345 |
Q |
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| T |
30600263 |
tattttcatacatgtttccggtgatgcatctatcacta |
30600226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 427
Target Start/End: Complemental strand, 30600184 - 30600149
Alignment:
| Q |
392 |
atagagtaggcatgcagcatgctgatggtatctact |
427 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
30600184 |
atagagtaggcatgcagcatgctgatggtatctact |
30600149 |
T |
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