View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14346_high_11 (Length: 426)
Name: NF14346_high_11
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 400
Target Start/End: Original strand, 43537514 - 43537922
Alignment:
| Q |
9 |
gaagaatatcgcgggattatatgaaaatggaatggatatataacaatcatgtggagcaaaactctatataaaggccagttaagagattagagctttatgg |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43537514 |
gaagaaaatcgcgggattatatgaaaatggaatggatctataacaatcatgtggagcaaaactctatataaaggccagttaagaggttagagctttatgg |
43537613 |
T |
|
| Q |
109 |
atacaactaccaaaatacccttctagttgggtccaatatatata--------attatgttatgttgtggttttgtctactcatataattgagcacgtctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43537614 |
atacaactaccaaaatacccttctagttgggtcctatatatatatatatataattatgttatgttgtggttttgtctactcatataattgagcacgtctt |
43537713 |
T |
|
| Q |
201 |
tgtgataagtactgaacttgcgacatgaaagatgtaattacatg---------tatgataattgaccttccatcaatgcatgcttgacccagccattatt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43537714 |
tgtgataagtactgaacttgcgacatgaaagatgtaattacatgtatatcatgtatgataattgaccttccatcaatgcatgcttgacccagccattatt |
43537813 |
T |
|
| Q |
292 |
taccgtacacgtgttaggaacttatggtgtttttcattttccatgcaattgtaagactttggacacatcgtatgtgaaatagatttttgttgtcaaataa |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43537814 |
taccgtacacgtgttaggaacttatggtgtttttcattttccatgcaattgtaagactttggacacatcgtatgtgaaatagatttttgttgtcaaataa |
43537913 |
T |
|
| Q |
392 |
tcacactat |
400 |
Q |
| |
|
||||||||| |
|
|
| T |
43537914 |
tcacactat |
43537922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University