View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_high_13 (Length: 385)
Name: NF14346_high_13
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 50 - 369
Target Start/End: Complemental strand, 47709946 - 47709633
Alignment:
| Q |
50 |
gagtttgaggttagtgtggagaagagaaaaaataaagtatatttcacttcagtcaaggttggcatcagcttggaactcactataaactcattttaccatg |
149 |
Q |
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| T |
47709946 |
gagtttgaggttagtgtggagaagagaaaaaataaagtatatttcacttcactcaaggttggcatcagcttggaactcactataaactcattttaccatg |
47709847 |
T |
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| Q |
150 |
gcttttttaagttccaacatgttgattataaaagtaagctagggatagatttggagttgaaagtatgtataaactcannnnnnnatgtttaggattgagg |
249 |
Q |
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| T |
47709846 |
gcttttttaagttccaaaatgttgattataaaagttagctagggatagatttggagttgaaagtatgtataaactca-ttttttatgtttaggattgagg |
47709748 |
T |
|
| Q |
250 |
gcaaaaataaacatgtaaaaggaatttttcttcattgttaatttgttcaaagacattgactgctattgatg---tattattagactttctggtatgctat |
346 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47709747 |
gcaaaaataaacatgtaaaaggaatttttcttca--------ttgttcaaagacattgactgctattgatgtattattattagactttctggtatgctat |
47709656 |
T |
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| Q |
347 |
tttcttgttgtagatattgttca |
369 |
Q |
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||||||||||||||||||||||| |
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| T |
47709655 |
tttcttgttgtagatattgttca |
47709633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 47710014 - 47709981
Alignment:
| Q |
16 |
attgaagttgccaagaatgtaatccaaaatcatg |
49 |
Q |
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| T |
47710014 |
attgaagttgccaagaatgtaatccaaaatcatg |
47709981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 39492480 - 39492447
Alignment:
| Q |
16 |
attgaagttgccaagaatgtaatccaaaatcatg |
49 |
Q |
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| T |
39492480 |
attgaagttgccaagaatgtaatccaaaatcatg |
39492447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 35839780 - 35839813
Alignment:
| Q |
16 |
attgaagttgccaagaatgtaatccaaaatcatg |
49 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35839780 |
attgaagttgccaagaatgtaatccaaaatcatg |
35839813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 18184970 - 18185010
Alignment:
| Q |
312 |
ctattgatgtattattagactttctggtatgctattttctt |
352 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||| |
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| T |
18184970 |
ctattgatatattatcagactttctggtatgctattttctt |
18185010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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