View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_high_15 (Length: 364)
Name: NF14346_high_15
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 38768018 - 38767660
Alignment:
| Q |
1 |
taatatcagtgtatcattcattatattgtatagctccctacaaacttatattatatataagcaatttggtccaaggtccttaccatagccttggcataca |
100 |
Q |
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| T |
38768018 |
taatatcagtgtatcattcattatattgtatagctccctacaaacttatat-----ataagcaatttggtccaaggtccttaccatagccttggcataca |
38767924 |
T |
|
| Q |
101 |
aaggcacaagtagtgacacgcaagaattcttcaatctcggagcttaaggctgcacctccagatattattagtctaacacgtccccctagccttgctttga |
200 |
Q |
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| T |
38767923 |
aaggcacaagtagtgacacgcaagaattcttcaatctcggagcttaaggctgcacctccagatattattagtctaacacgtccacctagccttgctttga |
38767824 |
T |
|
| Q |
201 |
cctaatggtgtgttaaggagaaggttcagaaattggtccctaacattactagctagtacatgcaagaga--------------atatatatatgtataga |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |
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| T |
38767823 |
cctaatggtgtgttaaggagaaggttcagaaattggtccctaacatta----ctagtacatgcaagagaatatatatatatatatatatatatatataga |
38767728 |
T |
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| Q |
287 |
cacacacaacctttctgaaggctagaaggtctgcaagacgtgatgcttctctctgtttgtatcctttg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38767727 |
cacacacaacctttctgaaggctagaaggtctgcaagacgtgatgcttctctctgtgtgtatcctttg |
38767660 |
T |
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Back To:
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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 44996597 - 44996725
Alignment:
| Q |
77 |
tccttaccatagccttggcatacaaaggcacaagtagtgacacgcaagaattcttcaatctcggagcttaaggctgcacctccagatattattagtctaa |
176 |
Q |
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||||||||||||||||| |||||||| |||| || ||| |||||||| |||||||||||||| || || || | ||||||||| | ||||||||||| || |
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| T |
44996597 |
tccttaccatagccttgacatacaaaagcaccagaagtaacacgcaaaaattcttcaatctctgaactcaatggtgcacctccggttattattagtcgaa |
44996696 |
T |
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| Q |
177 |
cacgtccccctagccttgctttgacctaa |
205 |
Q |
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||||||| |||| || |||||||||||| |
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| T |
44996697 |
cacgtcctcctaaccgagctttgacctaa |
44996725 |
T |
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