View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_high_16 (Length: 349)
Name: NF14346_high_16
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 25583418 - 25583742
Alignment:
| Q |
11 |
ctactaccaacagagaatgcagaactggcaacagggtaacctacacttaatgcatgtttggattgactgtgagttttttattaccgtaattttggcaaaa |
110 |
Q |
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| T |
25583418 |
ctactaccaacatagaatgcagaactggcaacagggtaacctacacttaatgcatgtttggattgactgtgagttttttattaccgtaattttggcaaaa |
25583517 |
T |
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| Q |
111 |
acttcattttgaagcttcaaccaaacgacggcgctactgtgatttcgttaaactcactgtaattccaaacatgcagttaattcctccttttggagttgtt |
210 |
Q |
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| T |
25583518 |
actacattttgaagcttcaaccaaacgacggcgctactgtgatttcgttaaactcactgtaattccaaacatgcagttaattcctccttttggagttgtt |
25583617 |
T |
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| Q |
211 |
gttttcatgatggaaatcaagtaaaacagtgcttttgcatttagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaacca |
310 |
Q |
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| T |
25583618 |
gttttcatgatggaaatcaagtaaaacagtgcttttacatttagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaacca |
25583717 |
T |
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| Q |
311 |
accaaaaccatggaagtggcttctg |
335 |
Q |
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| T |
25583718 |
accaaaaccatggaagtggcttctg |
25583742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 42894191 - 42894106
Alignment:
| Q |
224 |
aaatcaagtaaaacagtgcttttgcatttagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaacc |
309 |
Q |
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| T |
42894191 |
aaatcaagcaaaacggtgctgtgacattttggacattttggatcattctcagagagcatcacatacatgagacaacgaggacaacc |
42894106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 41696776 - 41696812
Alignment:
| Q |
149 |
gtgatttcgttaaactcactgtaattccaaacatgca |
185 |
Q |
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| T |
41696776 |
gtgatttcgttaaactcactgtcattccaaacatgca |
41696812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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