View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_high_2 (Length: 597)
Name: NF14346_high_2
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_2 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Original strand, 32569066 - 32569630
Alignment:
| Q |
19 |
agtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcagcttcctgcattggtaaaaagcaaggtatttgatca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32569066 |
agtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcaacttcctgcattggtaaaaagcaaggtatttgatca |
32569165 |
T |
|
| Q |
119 |
ttgctgtttttgttattgtttaaattgtggatatttttccttaatttaagattgttgtctaatatatgttcgaaattaaaggaacattataccttagcaa |
218 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |
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| T |
32569166 |
ttgctgtttttgttattgtttaaactgtagatatttttccttaatttaagattgttgtctaatatatgttcaaaattaaaggaacattgtacgttagctg |
32569265 |
T |
|
| Q |
219 |
accaaacacatgaagattgtacgaaacactcattattgaaccaaatttgataataagtgagtgtttagacatgaaaattatgaaatccgcttataaatta |
318 |
Q |
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| T |
32569266 |
a---aacacacgaagattgtacgaaacactcattattgaatcaaatttgataataagtgagtgtttagacatgaaaattatgaaatctgcctctaagtta |
32569362 |
T |
|
| Q |
319 |
agtgggnnnnnnnttcattataaagattggttttcttaaacactcttgctcataatattcggtaacataacacttattagagaaagaagaacagattact |
418 |
Q |
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||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |
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| T |
32569363 |
agtggcaaaaaaattcattatgaagattggttttcttaaacacttttgctcataatattcggtaacataacactta---gagaaagaagagcggattact |
32569459 |
T |
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| Q |
419 |
acacaagctacagcaataaactccacctcaccaatgcaagtttacttgagtgacacactagctagtcttaattagtttgatctagtgtattagcatgtga |
518 |
Q |
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|||||||||||| |||||||||| |||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32569460 |
acacaagctacaacaataaactctacctcaccaa-----gtttacttgagtcacaagctatctagtcttaattagtttgatctagtgtattagcatgtga |
32569554 |
T |
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| Q |
519 |
ttaggttcaatgtactttacattttgcctataaatacacattgtactccctttttcatctatgagaaatgagacta |
594 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32569555 |
ttaggttctatgtactttacattttgtctataaatacacattgtactccctttttcatctatgagaaatgagacta |
32569630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 32525306 - 32525205
Alignment:
| Q |
21 |
tcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcagcttcctgcattggtaaaaagcaaggtatttgatcatt |
120 |
Q |
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||||| |||||||| ||||| |||||||| | |||| ||||| || || |||||||| || |||||||||||||| |||||||||||| ||||||||| |
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| T |
32525306 |
tcaacgattccattacagctgtctggtctccgcaattgcatcctgatcggagatgagagacaacttcctgcattggtgaaaagcaaggtagttgatcatt |
32525207 |
T |
|
| Q |
121 |
gc |
122 |
Q |
| |
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|| |
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| T |
32525206 |
gc |
32525205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 32531668 - 32531607
Alignment:
| Q |
60 |
atcctaataggtgatgagaggcagcttcctgcattggtaaaaagcaaggtatttgatcattg |
121 |
Q |
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|||||||| || |||||||| || ||||||||||| ||||||||||||||| |||| ||||| |
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| T |
32531668 |
atcctaattggagatgagagacaacttcctgcattagtaaaaagcaaggtacttgaccattg |
32531607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 523
Target Start/End: Complemental strand, 38629842 - 38629779
Alignment:
| Q |
460 |
ttacttgagtgacacactagctagtcttaattagtttgatctagtgtattagcatgtgattagg |
523 |
Q |
| |
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|||||||||| ||| ||||||| | |||||||| || || ||||||||||||||||||||||| |
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| T |
38629842 |
ttacttgagtcacaagctagctactattaattagcttaatttagtgtattagcatgtgattagg |
38629779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 392 - 597
Target Start/End: Original strand, 8754323 - 8754523
Alignment:
| Q |
392 |
ttattagagaaagaagaacagattactacacaagctacagcaataaactccacctcaccaatgcaagtttacttgagtgacacactagctagtcttaatt |
491 |
Q |
| |
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|||||| |||||||| | ||||| |||||||||||||| |||||| ||| || ||||||| |||||||||||| ||| ||||||||| |||||| |
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| T |
8754323 |
ttattaaagaaagaaaagaagattgctacacaagctacaacaataatctctacttcaccaa-----gtttacttgagtcacaagctagctagtattaatt |
8754417 |
T |
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| Q |
492 |
agtttgatctagtgtattagcatgtgattaggttcaatgtactttacattttgcctataaatacacattgtactccctttttcatctatgagaaatgaga |
591 |
Q |
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||||| |||||||||||||||||||||||||| | ||||||||| | ||| ||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
8754418 |
agtttaatctagtgtattagcatgtgattaggatttgtgtactttatacttttcctataaatacctattgtactatctttttcatctatgagaaatgaga |
8754517 |
T |
|
| Q |
592 |
ctattt |
597 |
Q |
| |
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|||||| |
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| T |
8754518 |
ctattt |
8754523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 457 - 597
Target Start/End: Complemental strand, 24065409 - 24065269
Alignment:
| Q |
457 |
agtttacttgagtgacacactagctagtcttaattagtttgatctagtgtattagcatgtgattaggttcaatgtactttacattttgcctataaataca |
556 |
Q |
| |
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||||||||||||| ||| ||||||||| || ||||||| ||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||| |
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| T |
24065409 |
agtttacttgagttacaagctagctagttatacttagtttaatctagtagattagcatgtgattaggcttaatgtactttacatattgcctataaatact |
24065310 |
T |
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| Q |
557 |
cattgtactccctttttcatctatgagaaatgagactattt |
597 |
Q |
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| ||||||| ||||| |||||||||||||||||||||||| |
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| T |
24065309 |
ctatgtactcacttttacatctatgagaaatgagactattt |
24065269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 457 - 597
Target Start/End: Complemental strand, 3137947 - 3137807
Alignment:
| Q |
457 |
agtttacttgagtgacacactagctagtcttaattagtttgatctagtgtattagcatgtgattaggttcaatgtactttacattttgcctataaataca |
556 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| |||| || ||| ||| |||| ||||| |||||| | |||||||||||||| |||||||||||||| |
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|
| T |
3137947 |
agtttacttgagttacaagctagctagtcttacttagcttaatcaagttgattaacatgtcattaggcttaatgtactttacatattgcctataaatact |
3137848 |
T |
|
| Q |
557 |
cattgtactccctttttcatctatgagaaatgagactattt |
597 |
Q |
| |
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| ||||||| |||| |||||||||||||||||||||||| |
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| T |
3137847 |
gaatgtactcactttcacatctatgagaaatgagactattt |
3137807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 463 - 597
Target Start/End: Original strand, 24674333 - 24674467
Alignment:
| Q |
463 |
cttgagtgacacactagctagtcttaattagtttgatctagtgtattagcatgtgattaggttcaatgtactttacattttgcctataaatacacattgt |
562 |
Q |
| |
|
||||||| ||| ||||||||| || ||||||| || |||| |||||||||||| |||||| |||||||||||||| |||| ||||||||| | ||| |
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| T |
24674333 |
cttgagttacaagctagctagttatacttagtttaatatagtagattagcatgtgactaggtttaatgtactttacatattgcatataaataccctatgt |
24674432 |
T |
|
| Q |
563 |
actccctttttcatctatgagaaatgagactattt |
597 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| |
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|
| T |
24674433 |
actcactttcacatctatgagaaatgagcctattt |
24674467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 523
Target Start/End: Original strand, 7684772 - 7684819
Alignment:
| Q |
476 |
ctagctagtcttaattagtttgatctagtgtattagcatgtgattagg |
523 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||||| |||||| |
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| T |
7684772 |
ctagctagtattaattagcttaatctagtgtattagcatgttattagg |
7684819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 460 - 597
Target Start/End: Complemental strand, 25242094 - 25241953
Alignment:
| Q |
460 |
ttacttgagtgacacactagctagtcttaattagtttgatctagtgtattagcatgtgattaggttcaatgtactttacattttgcctataaatac---- |
555 |
Q |
| |
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|||||||||| ||| ||||||||| |||||||||| ||||||| |||| |||||||||||| | |||||||||||||| ||| ||| |||||| |
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| T |
25242094 |
ttacttgagttacaagctagctagttataattagtttaatctagtagattaacatgtgattaggcttaatgtactttacatattgactaaaaataccgta |
25241995 |
T |
|
| Q |
556 |
acattgtactccctttttcatctatgagaaatgagactattt |
597 |
Q |
| |
|
|| |||||| |||| |||||||||||||||||||||||| |
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|
| T |
25241994 |
tcaatgtacttactttcacatctatgagaaatgagactattt |
25241953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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