View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_high_20 (Length: 330)
Name: NF14346_high_20
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 44530817 - 44531120
Alignment:
| Q |
9 |
aatattagtacaaaggtaacttagaaacaaagaaacaaagatattttgatgagtccatcatgttcatatatatgacacaaatactcaatcacaacttatt |
108 |
Q |
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| T |
44530817 |
aatattagtacaaaggtaacttagaaacaaagaaacaaagatattttgatgagtccatcatgttcatat----gacacaaatactcaatcacaacttatt |
44530912 |
T |
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| Q |
109 |
acattgagtaggaataaaagtaatagtttccttctgaagatcatgattaaccaaaatattttgttgttgaatattaccaaagatagacattccattagaa |
208 |
Q |
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| T |
44530913 |
acattgagtaggaataaaagtaatagtttccttctgaagatcatgattaaccaaaatattttgttgttgaatattaccaaagatagacattccattagaa |
44531012 |
T |
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| Q |
209 |
gctcccatagctaaacaagcaacacctaaacttgaatcagcaatcatataattttcaccaggcaattccaaatcaccacctttgaaatgaaaaactaatt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44531013 |
gctcccatagctaaacaagcaacacctaaacttgaatcagcaatcatataattttcaccaggcaattccaaatcaccacctttgaaatgaaaaactaatt |
44531112 |
T |
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| Q |
309 |
ttggaatt |
316 |
Q |
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|||||||| |
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| T |
44531113 |
ttggaatt |
44531120 |
T |
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