View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14346_high_21 (Length: 321)
Name: NF14346_high_21
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 72 - 314
Target Start/End: Original strand, 9232724 - 9232968
Alignment:
| Q |
72 |
ttcactgctttaagtacatttcgttttatgatacttccttcataacaatagcagattccaaaccttataaagggaaaatgtacccttaannnnnnnnnnn |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
9232724 |
ttcactgctttaagtacatttcgttttatgatacttccttcataacaatagcagattccaaaccttttaaagggaaa-tgtacccttaattttttttttt |
9232822 |
T |
|
| Q |
172 |
naaatatattttaatta---ggacttgattttccagatgaaagtttaacttacatgcatattcaatcacataaggtttaacttaatcataaatatatccc |
268 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9232823 |
aaaatatattttaattattaggacttgattttccagatgaaagtttaacttacatgcatattcaatcacataaggtttaacttaatcataaatatatccc |
9232922 |
T |
|
| Q |
269 |
ttactaagatcttaagatttatacgtatatacatacagaataattt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9232923 |
ccactaagatcttaagatttatacgtatatacatacagaataattt |
9232968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 9232670 - 9232701
Alignment:
| Q |
18 |
ataaatgcatagtgaaaagagatccttctctc |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
9232670 |
ataaatgcatagtgaaaagagatccttctctc |
9232701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University