View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_high_26 (Length: 283)
Name: NF14346_high_26
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_26 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 46892487 - 46892223
Alignment:
| Q |
19 |
aggcaggaagtaatgaaacttgaagaaatgaagaagatagccaaaggttgtggcagaacatccgtagatgttttaaaactctttgacttttaatttgcat |
118 |
Q |
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| T |
46892487 |
aggcaggaagtaatgaaacttgaagaaatgaagaagatagccaaaggttgtggcagaacatccatagatgttttaaaactctttgacttttaatttgcat |
46892388 |
T |
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| Q |
119 |
tctaaaatgattactgcaaggttttactgcaaaagactagttctacaaaaaccgagtgaattctaaacaatttttcaattattgctgaaaatatattatt |
218 |
Q |
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| T |
46892387 |
tctaaaatgattactgcaaggttttactgcaaaagactagttctacaaaaaccgagtgaattctaaacaatttttcaattattgctgaaaatatattatt |
46892288 |
T |
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| Q |
219 |
cagacccaattctgccatagatgtgcaactatcgctgtgttaccaatgtgcatatgaggatgatg |
283 |
Q |
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| T |
46892287 |
cagacccaattctgccatagatgtgcaactatcgctgtgttaccaatgtgcatacgaggatgatg |
46892223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 101 - 271
Target Start/End: Complemental strand, 46898950 - 46898778
Alignment:
| Q |
101 |
ttgacttttaatttgcattctaaaatgattactg-caaggttttactgcaaaagactagttctacaaaaaccgagtgaattctaaacaatttttcaatta |
199 |
Q |
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| T |
46898950 |
ttgacttttaaattgcattaaaaaatgattacagacaaggttttattgcaaaatactagttctacaaaaacaacttgaattctaaagaatttttcgatta |
46898851 |
T |
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| Q |
200 |
ttgctgaaaatatat-tattcagacccaattctgccatagatgtgcaactatcgctgtgttaccaatgtgcat |
271 |
Q |
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| T |
46898850 |
ttgctgaaaatttatctattcaaacccaattatacgattgatgtgcaactatcattgtgttacagatgtgcat |
46898778 |
T |
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